RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 RBM38Q9H0Z9 239 aaKnown RBP9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 MIXL1Q9H2W2 232 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 C16orf95Q9H693 158 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 OR2W1Q9Y3N9 320 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 MMP24Q9Y5R2 645 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 M0QZK8 103 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 PMP2P02689 132 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 CT45A6P0DMU7 189 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 CT45A5P0DMU8 189 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 CT45A7P0DMV0 189 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 OR5H8P0DN80 308 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 FCGR2CP31995 323 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 FAM131AQ6UXB0 335 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 OR5AP2Q8NGF4 316 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 OR5H2Q8NGV7 314 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 GPX8Q8TED1 209 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 C15orf40Q8WUR7 153 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 SNAPC3Q92966 411 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 SLIRPQ9GZT3 109 aaKnown RBP9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF702PQ9H963 129 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 SCPEP1Q9HB40 452 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 SDHAF2Q9NX18 166 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 EHFQ9NZC4 300 aa9.14□□□□□ -0.95
CCDC88C-212ENST00000556767 OR5H14A6NHG9 310 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF701M0R085 212 aaPredicted RBP9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 SULT1C2O00338 296 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 APOA2P02652 100 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 VSIG10L2P0DP72 767 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 HLA-DMAP28067 261 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 MC5RP33032 325 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 TAS2R46P59540 309 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 IL18Q14116 193 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 EBI3Q14213 229 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 CDK10Q15131 360 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 Q6ZS46 218 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 WASHC3Q9Y3C0 194 aa9.13□□□□□ -0.95
CCDC88C-212ENST00000556767 COL6A5A8TX70 2615 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 DPPA5A6NC42 116 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 H0YJW9 148 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 FGF16O43320 207 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 PROP1O75360 226 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 TUSC2O75896 110 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 AADACP22760 399 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 S100A5P33763 92 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 RCVRNP35243 200 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 VDAC2P45880 294 aaPredicted RBP9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 RFX2P48378 723 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 LINC00205P59089 165 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 FXYD4P59646 89 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 ACTBP60709 375 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 HERV-K104P61576 105 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 MMDQ15546 238 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 TMEM95Q3KNT9 176 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 C11orf88Q6PI97 169 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 Q8N6K4 173 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF645Q8N7E2 425 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 C5orf56Q8N8D9 126 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF383Q8NA42 475 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 OR8H1Q8NGG4 311 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 OR52I2Q8NH67 350 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 SECTM1Q8WVN6 248 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 FCAMRQ8WWV6 532 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 ABHD1Q96SE0 405 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 RASL11BQ9BPW5 248 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF747Q9BV97 191 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 NDUFA13Q9P0J0 144 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 GAB2Q9UQC2 676 aa9.12□□□□□ -0.95
CCDC88C-212ENST00000556767 IGKV1D-13A0A0B4J2D9 117 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 RBBP9O75884 186 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 PPYP01298 95 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 AMY1AP04745 511 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 AMY2AP04746 511 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 IGKV1-13P0DP09 117 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 NAT1P18440 290 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 TNFSF8P32971 234 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 HRH1P35367 487 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 THBS3P49746 956 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 F2RL1P55085 397 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 PROK1P58294 105 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 TSPAN5P62079 268 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 SRSF4Q08170 494 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 CBX3Q13185 183 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 PYHIN1Q6K0P9 492 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 SHISA2Q6UWI4 295 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 LYSMD2Q8IV50 215 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 Q8N2B8 174 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 KLHDC1Q8N7A1 406 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 Q8N9W7 124 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 OR5AN1Q8NGI8 311 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 WFDC12Q8WWY7 111 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 DGCR14Q96DF8 476 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 RITA1Q96K30 269 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 ZNF2Q9BSG1 426 aaPredicted RBP9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 SLC5A7Q9GZV3 580 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 NXF2Q9GZY0 626 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 MMP27Q9H306 513 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 SLC35D1Q9NTN3 355 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 KIAA1456Q9P272 454 aa9.11□□□□□ -0.95
CCDC88C-212ENST00000556767 KLK11Q9UBX7 282 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms