RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 IRF2P14316 349 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 VDAC1P21796 283 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 ATP6V0CP27449 155 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 GLIPR1P48060 266 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 GUK1Q16774 197 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 PPP1R35Q8TAP8 253 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 FAM213BQ8TBF2 198 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 CISD1Q9NZ45 108 aaKnown RBP11.92□□□□□ -0.5
VPS33A-209ENST00000544349 PRELID3BQ9Y3B1 194 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 PKD1L2Q7Z442 2459 aa11.92□□□□□ -0.5
VPS33A-209ENST00000544349 NBASA2RRP1 2371 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 DSCAMO60469 2012 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 DEFB108AA8MXU0 73 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 B9A039 149 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 TSPAN9O75954 239 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 HEXAP06865 529 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 F2RP25116 425 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 LOXP28300 417 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-209ENST00000544349 DYNLT3P51808 116 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 FLI1Q01543 452 aaPredicted RBP11.91□□□□□ -0.5
VPS33A-209ENST00000544349 CMTM1Q8IZ96 169 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 TPRX1Q8N7U7 411 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 OR5C1Q8NGR4 320 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 EGLN1Q9GZT9 426 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 MS4A5Q9H3V2 200 aa11.91□□□□□ -0.5
VPS33A-209ENST00000544349 DUXBA0A1W2PPF3 345 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 C12orf77C9JDV5 145 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 IGKV1-39P01597 117 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 IGKV1D-39P04432 117 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 PAX9P55771 341 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 RUNX1Q01196 453 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 ID3Q02535 119 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 STUMQ69YW2 141 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 TMEM217Q8N7C4 229 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 ZNRF1Q8ND25 227 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 MRGPRDQ8TDS7 321 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 RXFP4Q8TDU9 374 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 SAP30LQ9HAJ7 183 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 DYNLRB1Q9NP97 96 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 DCAF16Q9NXF7 216 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 H3BP45 60 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 H7C2Y5 167 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 MGST3O14880 152 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 HSPA12AO43301 675 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 VAMP2P63027 116 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 TEX36Q5VZQ5 186 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 ZNF808Q8N4W9 903 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-209ENST00000544349 OR13A1Q8NGR1 328 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 OR1L1Q8NH94 360 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 GALMQ96C23 342 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 LURAP1Q96LR2 239 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 SAV1Q9H4B6 383 aaPredicted RBP11.9□□□□□ -0.5
VPS33A-209ENST00000544349 PLEKHF2Q9H8W4 249 aa11.9□□□□□ -0.5
VPS33A-209ENST00000544349 STRAPQ9Y3F4 350 aaKnown RBP11.9□□□□□ -0.5
VPS33A-209ENST00000544349 MEX3AA1L020 520 aaKnown RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 LRRC30A6NM36 301 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ZG16O60844 167 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 CLDN14O95500 239 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 HBZP02008 142 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 EDDM3AQ14507 147 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF672Q499Z4 452 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 Q6ZRM9 215 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF561Q8N587 486 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 DEFB108BQ8NET1 73 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 OR10V1Q8NGI7 309 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 GPR146Q96CH1 333 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 SDSLQ96GA7 329 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 TMEM204Q9BSN7 226 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 FBXO7Q9Y3I1 522 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 KPTNQ9Y664 436 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ITPR1Q14643 2758 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ROS1P08922 2347 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 RAI1Q7Z5J4 1906 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 KIAA1324LA8MWY0 1029 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 GPR37O15354 613 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 NDUFA2O43678 99 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 CHST1O43916 411 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 IL2RGP31785 369 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 CEACAM6P40199 344 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 CCL20P78556 96 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 AWAT1Q58HT5 328 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 FAM53AQ6NSI3 398 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 OR2G3Q8NGZ4 309 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ITLN2Q8WWU7 325 aaPredicted RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 IL22RA2Q969J5 263 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ABHD14BQ96IU4 210 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 C20orf24Q9BUV8 137 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 EIF5A2Q9GZV4 153 aaKnown RBP11.89□□□□□ -0.51
VPS33A-209ENST00000544349 MLXQ9UH92 298 aa11.89□□□□□ -0.51
VPS33A-209ENST00000544349 ARFGEF3Q5TH69 2177 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 AGAP20933 346 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 TMEM267Q0VDI3 215 aaPredicted RBP11.88□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF266Q14584 549 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 TRAT1Q6PIZ9 186 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 MUC15Q8N387 334 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 CLCC1Q96S66 551 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 DCTN5Q9BTE1 182 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 ZNF665Q9H7R5 613 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 USF3Q68DE3 2245 aa11.88□□□□□ -0.51
VPS33A-209ENST00000544349 ODAMA1E959 279 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms