RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RPA2P15927 270 aa17.41■□□□□ 0.38
VPS28-212ENST00000530836 NFYBP25208 207 aa17.41■□□□□ 0.38
VPS28-212ENST00000530836 OR51H1Q8NH63 302 aa17.41■□□□□ 0.38
VPS28-212ENST00000530836 RBPMSQ93062 196 aaKnown RBP17.41■□□□□ 0.38
VPS28-212ENST00000530836 IGHV4-30-2A0A087WSY4 118 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 EIF4EBP1Q13541 118 aaPredicted RBP17.4■□□□□ 0.38
VPS28-212ENST00000530836 ESCO2Q56NI9 601 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 PRAMEF5Q5TYX0 476 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 TMEM268Q5VZI3 342 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 GGNBP1Q5YKI7 109 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 FAM53AQ6NSI3 398 aaPredicted RBP17.4■□□□□ 0.38
VPS28-212ENST00000530836 C8orf31Q8N9H6 132 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 SEC22AQ96IW7 307 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 SDHAF2Q9NX18 166 aa17.4■□□□□ 0.38
VPS28-212ENST00000530836 hCG_1809904A0A1W2PP81 198 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 A0A1W2PPE2 198 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 A0A1W2PR64 198 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 A0A1W2PRV1 198 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 G3V3Q6 166 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 RAB29O14966 203 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 GNB2P62879 340 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 ZNF439Q8NDP4 499 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 IFI27L2Q9H2X8 130 aa17.39■□□□□ 0.38
VPS28-212ENST00000530836 CELSR1Q9NYQ6 3014 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 C17orf98A8MV24 154 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 VWC2LB2RUY7 222 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 CCL3L1P16619 93 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 ZNF134P52741 427 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 DLX6P56179 175 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 CT45A1Q5HYN5 189 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 SLC25A48Q6ZT89 311 aaKnown RBP17.39■□□□□ 0.37
VPS28-212ENST00000530836 LYZL2Q7Z4W2 148 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 SELENOHQ8IZQ5 122 aaKnown RBP17.39■□□□□ 0.37
VPS28-212ENST00000530836 SLC35G3Q8N808 338 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 DRAXINQ8NBI3 349 aaPredicted RBP17.39■□□□□ 0.37
VPS28-212ENST00000530836 CT45A3Q8NHU0 189 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 CD300LFQ8TDQ1 290 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 PPP1R1CQ8WVI7 109 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 ABHD14BQ96IU4 210 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 SPIN2AQ99865 258 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 SPIN2BQ9BPZ2 258 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 PIMREGQ9BSJ6 248 aa17.39■□□□□ 0.37
VPS28-212ENST00000530836 A0A087X0M5 115 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 A0A1B0GX30 115 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 HMSDA8MTL9 139 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 PET100P0DJ07 73 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 SLC25A16P16260 332 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 VDAC1P21796 283 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 IAH1Q2TAA2 248 aaPredicted RBP17.38■□□□□ 0.37
VPS28-212ENST00000530836 LY6G5BQ8NDX9 201 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 OR11H4Q8NGC9 324 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 LHFPL5Q8TAF8 219 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 OR10C1Q96KK4 312 aa17.38■□□□□ 0.37
VPS28-212ENST00000530836 SSBP3Q9BWW4 388 aaPredicted RBP17.38■□□□□ 0.37
VPS28-212ENST00000530836 PPIAL4CA0A0B4J2A2 164 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 MMP23AO75900 390 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 ATG12O94817 140 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 LIPFP07098 398 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 PPIAL4GP0DN37 164 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 PSMB6P28072 239 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 Q5BKY6 102 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 WDR89Q96FK6 387 aaPredicted RBP17.37■□□□□ 0.37
VPS28-212ENST00000530836 GPHA2Q96T91 129 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 REG4Q9BYZ8 158 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 BPESC1Q9GZL8 116 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 ZFP57Q9NU63 452 aa17.37■□□□□ 0.37
VPS28-212ENST00000530836 MPTX1A8MV57 137 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 SLC25A4P12235 298 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 ZNF16P17020 682 aaPredicted RBP17.36■□□□□ 0.37
VPS28-212ENST00000530836 C11orf87Q6NUJ2 197 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 THAP6Q8TBB0 222 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 TCTEX1D2Q8WW35 142 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 SESN1Q9Y6P5 492 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 RNF223E7ERA6 249 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 IGHV1-8P0DP01 117 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 IL15RAQ13261 267 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 TMEM65Q6PI78 240 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 LINC00311Q8N616 119 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 ZNF596Q8TC21 504 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 LSM10Q969L4 123 aaKnown RBP17.36■□□□□ 0.37
VPS28-212ENST00000530836 C5orf30Q96GV9 206 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 ADTRPQ96IZ2 230 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 S1PR3Q99500 378 aa17.36■□□□□ 0.37
VPS28-212ENST00000530836 MPC2O95563 127 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 SLC25A6P12236 298 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 C4BPBP20851 252 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 DUTP33316 252 aaKnown RBP17.35■□□□□ 0.37
VPS28-212ENST00000530836 KIR2DS2P43631 304 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 C9orf62Q8N4C0 152 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 ZBTB8BQ8NAP8 495 aaPredicted RBP17.35■□□□□ 0.37
VPS28-212ENST00000530836 TNFRSF14Q92956 283 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 LEAP2Q969E1 77 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 GSKIPQ9P0R6 139 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 PRELID3BQ9Y3B1 194 aa17.35■□□□□ 0.37
VPS28-212ENST00000530836 LOC105371242A0A075B767 164 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 A0A096LNT2 108 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 TRAV14DV4A0A0A6YYC5 116 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 SLC31A2O15432 143 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 ZNF585BQ52M93 769 aa17.34■□□□□ 0.37
VPS28-212ENST00000530836 BTNL3Q6UXE8 466 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms