RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 IGFBP7Q16270 282 aa11.6□□□□□ -0.55
USP42-206ENST00000479544 FAM27BQ5VT28 67 aa11.6□□□□□ -0.55
USP42-206ENST00000479544 SMRP1Q8NCR6 262 aa11.6□□□□□ -0.55
USP42-206ENST00000479544 C22orf15Q8WYQ4 148 aa11.6□□□□□ -0.55
USP42-206ENST00000479544 SGK494Q96LW2 274 aa11.6□□□□□ -0.55
USP42-206ENST00000479544 BMPR1BO00238 502 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 ZG16O60844 167 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 KBTBD11O94819 623 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 NHLH1Q02575 133 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 OR8B8Q15620 311 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 RPEL1Q2QD12 228 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 LHFPL1Q86WI0 220 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 ZNF664Q8N3J9 261 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 CISD1Q9NZ45 108 aaKnown RBP11.59□□□□□ -0.55
USP42-206ENST00000479544 WASHC3Q9Y3C0 194 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 CHD3Q12873 2000 aaKnown RBP11.59□□□□□ -0.55
USP42-206ENST00000479544 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.55
USP42-206ENST00000479544 GNG10P50151 68 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 SPATA45Q537H7 98 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 LBHQ53QV2 105 aaPredicted RBP11.59□□□□□ -0.55
USP42-206ENST00000479544 STUMQ69YW2 141 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 KMT5CQ86Y97 462 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 BLNKQ8WV28 456 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 JOSD1Q15040 202 aaPredicted RBP11.59□□□□□ -0.55
USP42-206ENST00000479544 MIC13Q5XKP0 118 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 GTF3AQ92664 365 aaKnown RBP11.59□□□□□ -0.55
USP42-206ENST00000479544 DNAJC4Q9NNZ3 241 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 NOTCH4Q99466 2003 aa11.59□□□□□ -0.55
USP42-206ENST00000479544 TANC1Q9C0D5 1861 aa11.58□□□□□ -0.55
USP42-206ENST00000479544 TMEM30CPA0ZSE6 113 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 FBLL1A6NHQ2 334 aaKnown RBP11.58□□□□□ -0.56
USP42-206ENST00000479544 EREGO14944 169 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 NXPH1P58417 271 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 KCNIP2Q9NS61 270 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 B3GAT1Q9P2W7 334 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 A0A1B0GUS0 222 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 LYZL6O75951 148 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 TIAF1O95411 115 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 TNFRSF9Q07011 255 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 ARSJQ5FYB0 599 aaPredicted RBP11.58□□□□□ -0.56
USP42-206ENST00000479544 OR2D3Q8NGH3 330 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 OR52L2PQ8NGH6 319 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 H1FXQ92522 213 aaKnown RBP11.58□□□□□ -0.56
USP42-206ENST00000479544 LYZL4Q96KX0 146 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 MRPL18Q9H0U6 180 aaKnown RBP11.58□□□□□ -0.56
USP42-206ENST00000479544 SERTM2A0A1B0GWG4 89 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 WIPF3A6NGB9 483 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 NPIPB7O75200 414 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 PRR31Q5SQ13 230 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 DCAF12Q5T6F0 453 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 FNDC7Q5VTL7 733 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 TRIB1Q96RU8 372 aa11.58□□□□□ -0.56
USP42-206ENST00000479544 GDF9O60383 454 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 SRSF10O75494 262 aaKnown RBP11.57□□□□□ -0.56
USP42-206ENST00000479544 ZNF137PP52743 207 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 SCGB2A2Q13296 93 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 OPN3Q9H1Y3 402 aaPredicted RBP11.57□□□□□ -0.56
USP42-206ENST00000479544 GPR35Q9HC97 309 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 USF1P22415 310 aaPredicted RBP11.57□□□□□ -0.56
USP42-206ENST00000479544 MFAP2P55001 183 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 UCP3P55916 312 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 LYG1Q8N1E2 194 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 CADM4Q8NFZ8 388 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ZNF501Q96CX3 271 aaPredicted RBP11.57□□□□□ -0.56
USP42-206ENST00000479544 R3HDM4Q96D70 268 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 RNF122Q9H9V4 155 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 LTBP2Q14767 1821 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 FRMPD3Q5JV73 1810 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 PLXNA3P51805 1871 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 H0Y980 276 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 CHRNB4P30926 498 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ARR3P36575 388 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 RPL23P62829 140 aaKnown RBP11.57□□□□□ -0.56
USP42-206ENST00000479544 FAM19A2Q8N3H0 131 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 SCCPDHQ8NBX0 429 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ZDHHC16Q969W1 377 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ST6GALNAC6Q969X2 333 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ATP23Q9Y6H3 246 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 RAB7AP51149 207 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 SPEM2Q0P670 501 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 ZNF826PQ6ZT77 177 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 VKORC1L1Q8N0U8 176 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 SSUH2Q9Y2M2 353 aa11.57□□□□□ -0.56
USP42-206ENST00000479544 HELTA6NFD8 242 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 C1QTNF9P0C862 333 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 ATP5G3P48201 142 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 TMEM256Q8N2U0 113 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 CISD2Q8N5K1 135 aaKnown RBP11.56□□□□□ -0.56
USP42-206ENST00000479544 FAM216AQ8WUB2 273 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 PRR14LQ5THK1 2151 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 PMS2P1A4D2B8 440 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 TAS2R45P59539 299 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 RHOBP62745 196 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 UNQ6494/PRO21346Q6UXR6 183 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 SLC35E1Q96K37 410 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 COMMD5Q9GZQ3 224 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 CLEC1BQ9P126 229 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 ZNF391Q9UJN7 358 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 APELAP0DMC3 54 aa11.56□□□□□ -0.56
USP42-206ENST00000479544 CD1BP29016 333 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms