RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 OR52I1Q8NGK6 324 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 RHOXF1Q8NHV9 184 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 MRPL30Q8TCC3 161 aaKnown RBP12.99□□□□□ -0.33
VIM-204ENST00000478746 SELENOIQ9C0D9 397 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 BANF2Q9H503 90 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 SRD5A3Q9H8P0 318 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 SMPD3Q9NY59 655 aaPredicted RBP12.99□□□□□ -0.33
VIM-204ENST00000478746 STEAP1Q9UHE8 339 aa12.99□□□□□ -0.33
VIM-204ENST00000478746 CXorf65A6NEN9 183 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 OR11H12B2RN74 326 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 CD7P09564 240 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 AADACP22760 399 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 DYRK1AQ13627 763 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 C6orf141Q5SZD1 244 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 ZNF343Q6P1L6 599 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 LAX1Q8IWV1 398 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 OR5AN1Q8NGI8 311 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 NRG4Q8WWG1 115 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 IL1F10Q8WWZ1 152 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 GHSRQ92847 366 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 MUL1Q969V5 352 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 CYYR1Q96J86 154 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 TSNAXQ99598 290 aaKnown RBP12.98□□□□□ -0.33
VIM-204ENST00000478746 PEMTQ9UBM1 199 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 SLC23A1Q9UHI7 598 aa12.98□□□□□ -0.33
VIM-204ENST00000478746 RPL36Q9Y3U8 105 aaKnown RBP12.98□□□□□ -0.33
VIM-204ENST00000478746 ZNF785A8K8V0 405 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 OR2A4O95047 310 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 TRBV12-3P01733 135 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 LIMS3P0CW19 117 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 LIMS4P0CW20 117 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 IGFBP3P17936 291 aaPredicted RBP12.97□□□□□ -0.33
VIM-204ENST00000478746 RPS16P62249 146 aaKnown RBP12.97□□□□□ -0.33
VIM-204ENST00000478746 PMS2P11Q13670 270 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 CD300EQ496F6 205 aaPredicted RBP12.97□□□□□ -0.33
VIM-204ENST00000478746 XAF1Q6GPH4 301 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 SIGIRRQ6IA17 410 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 ZNF555Q8NEP9 628 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 MRPS18AQ9NVS2 196 aaKnown RBP12.97□□□□□ -0.33
VIM-204ENST00000478746 ABRACLQ9P1F3 81 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 KMT2AQ03164 3969 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 DNAH10Q8IVF4 4471 aa12.97□□□□□ -0.33
VIM-204ENST00000478746 AIREO43918 545 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 CRTAPO75718 401 aaPredicted RBP12.96□□□□□ -0.33
VIM-204ENST00000478746 MGMTP16455 207 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 CPEP16870 476 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 AWAT2Q6E213 333 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 JAGN1Q8N5M9 183 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 BVESQ8NE79 360 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 SNAPC3Q92966 411 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 ABHD14BQ96IU4 210 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 OR14A2Q96R54 314 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 WFDC10AQ9H1F0 79 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 CKLFQ9UBR5 152 aa12.96□□□□□ -0.33
VIM-204ENST00000478746 NUPR2A6NF83 97 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 PDCD6O75340 191 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 SPDEFO95238 335 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 DEFA5Q01523 94 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 HMGN3Q15651 99 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 RPP25LQ8N5L8 163 aaKnown RBP12.95□□□□□ -0.34
VIM-204ENST00000478746 CYGBQ8WWM9 190 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 USMG5Q96IX5 58 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 Q96M66 194 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 TMEM68Q96MH6 324 aa12.95□□□□□ -0.34
VIM-204ENST00000478746 TINAGL1Q9GZM7 467 aaPredicted RBP12.95□□□□□ -0.34
VIM-204ENST00000478746 LGALS7P47929 136 aa12.94□□□□□ -0.34
VIM-204ENST00000478746 GUCA2BQ16661 112 aa12.94□□□□□ -0.34
VIM-204ENST00000478746 TMPRSS11AQ6ZMR5 421 aa12.94□□□□□ -0.34
VIM-204ENST00000478746 DHRSXQ8N5I4 330 aa12.94□□□□□ -0.34
VIM-204ENST00000478746 DRAXINQ8NBI3 349 aaPredicted RBP12.94□□□□□ -0.34
VIM-204ENST00000478746 OR13C5Q8NGS8 318 aa12.94□□□□□ -0.34
VIM-204ENST00000478746 PARP12Q9H0J9 701 aaKnown RBP12.94□□□□□ -0.34
VIM-204ENST00000478746 FGF20Q9NP95 211 aaPredicted RBP12.94□□□□□ -0.34
VIM-204ENST00000478746 TRAV8-7A0A075B6U6 113 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 A0A0B4J203 849 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 LOC100130705A0A1B0GUX0 176 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 OGG1O15527 345 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 IGKV1-16P04430 117 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 ETV1P50549 477 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 AQP4P55087 323 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 DEFB114Q30KQ6 69 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 OR2G6Q5TZ20 316 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 TTC23Q5W5X9 447 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 CEMP1Q6PRD7 247 aaPredicted RBP12.93□□□□□ -0.34
VIM-204ENST00000478746 IZUMO2Q6UXV1 221 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 DYNLRB2Q8TF09 96 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 SMIM19Q96E16 107 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 OVOL2Q9BRP0 275 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 AGMATQ9BSE5 352 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 COA4Q9NYJ1 87 aa12.93□□□□□ -0.34
VIM-204ENST00000478746 TRBV5-5A0A0J9YX44 114 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 DCKP27707 260 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 PJVKQ0ZLH3 352 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 Q499Y3 187 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 CDH26Q8IXH8 852 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 NEDD4LQ96PU5 975 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 FAAP24Q9BTP7 215 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 BABAM2Q9NXR7 383 aa12.92□□□□□ -0.34
VIM-204ENST00000478746 RYR1P21817 5038 aa12.91□□□□□ -0.34
VIM-204ENST00000478746 ITGB1BP1O14713 200 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms