RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 STPG3Q8N7X2 389 aa13.27□□□□□ -0.28
PTPRF-206ENST00000429895 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.27□□□□□ -0.29
PTPRF-206ENST00000429895 DIRC3C9JPN6 131 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 SIAH2O43255 324 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 PTP4A3O75365 173 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 MFAP4P55083 255 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 MIC13Q5XKP0 118 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 KLK15Q9H2R5 256 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 CCL27Q9Y4X3 112 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 TEX29Q8N6K0 151 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 KNL1Q8NG31 2342 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 SGMS2Q8NHU3 365 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 WNT2BQ93097 391 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 LOXL4Q96JB6 756 aa13.27□□□□□ -0.29
PTPRF-206ENST00000429895 AKIRIN1Q9H9L7 192 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-206ENST00000429895 F12P00748 615 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV3-48P01763 117 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 GPX1P07203 203 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 ANOS1P23352 680 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 PNKDQ8N490 385 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 PILRBQ9UKJ0 227 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 KCNK7Q9Y2U2 307 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 A0A0B4J293 547 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 A0A0U1RQV5 110 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 TSPAN2O60636 221 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 EIF3GO75821 320 aaKnown RBP eCLIP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 IBA57Q5T440 356 aaKnown RBP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 MMD2Q8IY49 270 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 SGK494Q96LW2 274 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 MIOXQ9UGB7 285 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 LOC107984156A0A0G2JMH3 177 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 A0A1W2PPC1 479 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 C11orf91Q3C1V1 193 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 ARL17AQ8IVW1 177 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 VKORC1L1Q8N0U8 176 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 ZNF107Q9UII5 783 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 SIRT4Q9Y6E7 314 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV3OR16-13A0A075B7E8 117 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV3-74A0A0B4J1X5 117 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 DLX6P56179 175 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 ZNF56Q15929 161 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 RAB24Q969Q5 203 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 SRXN1Q9BYN0 137 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 TUBA4BQ9H853 241 aa13.26□□□□□ -0.29
PTPRF-206ENST00000429895 DXOO77932 396 aaKnown RBP13.25□□□□□ -0.29
PTPRF-206ENST00000429895 PPP1R17O96001 155 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 C9orf62Q8N4C0 152 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 NEU1Q99519 415 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 OR5AC2Q9NZP5 309 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 DSPPQ9NZW4 1301 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV3-66A0A0C4DH42 116 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 IGKV1-8A0A0C4DH67 115 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 C1QAP02745 245 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 CD99P14209 185 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 DNLZQ5SXM8 178 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 PEAR1Q5VY43 1037 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-206ENST00000429895 H0Y980 276 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 PRSS23O95084 383 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 CYB561D1Q8N8Q1 229 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 IGHV1-69-2A0A0G2JMI3 117 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 EPOPA6NHQ4 379 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 FAM74A7A6NL05 159 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 A8MWL6 223 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 MPDU1O75352 247 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 SP7Q8TDD2 431 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-206ENST00000429895 ZNF430Q9H8G1 570 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-206ENST00000429895 PITPNC1Q9UKF7 332 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 RREB1Q92766 1687 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 FXYD3Q14802 87 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 SAP25Q8TEE9 199 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 FOXJ2Q9P0K8 574 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 SCN1AP35498 2009 aa13.25□□□□□ -0.29
PTPRF-206ENST00000429895 FGF5P12034 268 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 MEIG1Q5JSS6 88 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 KLF14Q8TD94 323 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-206ENST00000429895 UNC119Q13432 240 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 AMELYQ99218 206 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 DCAF12L2Q5VW00 463 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 MYO5AQ9Y4I1 1855 aaKnown RBP13.24□□□□□ -0.29
PTPRF-206ENST00000429895 ODAMA1E959 279 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 PQLC2Q6ZP29 291 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 TRAF4Q9BUZ4 470 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-206ENST00000429895 BCL2P10415 239 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 CXorf66Q5JRM2 361 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-206ENST00000429895 RHOVQ96L33 236 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 GPR82Q96P67 336 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 GPR61Q9BZJ8 451 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 HS3ST3B1Q9Y662 390 aa13.24□□□□□ -0.29
PTPRF-206ENST00000429895 PGLYRP1O75594 196 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-206ENST00000429895 PRSS2P07478 247 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 OTX1P32242 354 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-206ENST00000429895 FAM3BP58499 235 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-206ENST00000429895 SEC11BP0C7V7 166 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 COX6A1P12074 109 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 GCSAMLQ5JQS6 135 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 KIAA1551Q9HCM1 1747 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 FCARP24071 287 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 LOC101059948A0A1B0GTJ6 334 aa13.23□□□□□ -0.29
PTPRF-206ENST00000429895 RPLP1P05386 114 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms