RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ATP5G3P48201 142 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 GPM6AP51674 278 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 DEFB119Q8N690 84 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 OR1L1Q8NH94 360 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 C1QTNF5Q9BXJ0 243 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 LIN7CQ9NUP9 197 aaKnown RBP9.04□□□□□ -0.96
USP54-204ENST00000422491 FOXJ2Q9P0K8 574 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 PPP1R3CQ9UQK1 317 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 WIPI2Q9Y4P8 454 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 RNF114Q9Y508 228 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 CBR3O75828 277 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 TIAF1O95411 115 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 KRASP01116 189 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 CRISP2P16562 243 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 CBLN1P23435 193 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 MMDQ15546 238 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 TRIP6Q15654 476 aaKnown RBP9.03□□□□□ -0.96
USP54-204ENST00000422491 OR56B2PQ8NGI1 322 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 RNASE8Q8TDE3 154 aaKnown RBP9.03□□□□□ -0.96
USP54-204ENST00000422491 HSPB7Q9UBY9 170 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 F2Z2F3 143 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 DEGS1O15121 323 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 RABEPKQ7Z6M1 372 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 KMT5CQ86Y97 462 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 FGFRL1Q8N441 504 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 STPG4Q8N801 248 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 OR4B1Q8NGF8 309 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 RDH5Q92781 318 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 CIB3Q96Q77 187 aaPredicted RBP9.03□□□□□ -0.96
USP54-204ENST00000422491 OR6C1Q96RD1 312 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 FOXB1Q99853 325 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 SF3B5Q9BWJ5 86 aaKnown RBP9.03□□□□□ -0.96
USP54-204ENST00000422491 PRDM14Q9GZV8 571 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 KCNIP2Q9NS61 270 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 SLC45A2Q9UMX9 530 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 ASCC3Q8N3C0 2202 aaKnown RBP9.03□□□□□ -0.96
USP54-204ENST00000422491 WDFY3Q8IZQ1 3526 aa9.03□□□□□ -0.96
USP54-204ENST00000422491 TRAV24A0A0B4J272 114 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 SYNGR4O95473 234 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 SERPINA7P05543 415 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 ZNF16P17020 682 aaPredicted RBP9.02□□□□□ -0.96
USP54-204ENST00000422491 CDC34P49427 236 aaPredicted RBP9.02□□□□□ -0.96
USP54-204ENST00000422491 MLF1P58340 268 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 VWC2Q2TAL6 325 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 Q6ZS52 159 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 COLCA1Q6ZS62 124 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 IL1F10Q8WWZ1 152 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 SGCZQ96LD1 299 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 FBXL7Q9UJT9 491 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 PPIAL4AQ9Y536 164 aa9.02□□□□□ -0.96
USP54-204ENST00000422491 MDFIC2A0A1B0GVS7 189 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 TRAPPC2LH3BP13 241 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 SYNGR1O43759 233 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 TRAPPC6AO75865 159 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 LIFP15018 202 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 BMP5P22003 454 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 TIMP3P35625 211 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 Q0VG73 95 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 TMEM249Q2WGJ8 235 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 CEACAM21Q3KPI0 293 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 Q8N7P7 452 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 PSMF1Q92530 271 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 DEFB126Q9BYW3 111 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 MRPL18Q9H0U6 180 aaKnown RBP9.02□□□□□ -0.97
USP54-204ENST00000422491 CHODLQ9H9P2 273 aa9.02□□□□□ -0.97
USP54-204ENST00000422491 F6UZH7 168 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CCL25O15444 150 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 MYF5P13349 255 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 KITLGP21583 273 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 DSCR4P56555 118 aaPredicted RBP9.01□□□□□ -0.97
USP54-204ENST00000422491 UBE2G2P60604 165 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CEACAM16Q2WEN9 425 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 MKXQ8IYA7 352 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CPEB3Q8NE35 698 aaKnown RBP9.01□□□□□ -0.97
USP54-204ENST00000422491 OR5A2Q8NGI9 324 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 PROK2Q9HC23 129 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CLN8Q9UBY8 286 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 TNRC6BQ9UPQ9 1833 aaKnown RBP9.01□□□□□ -0.97
USP54-204ENST00000422491 P0C879 139 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 PCBD1P61457 104 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 SAPCD1Q5SSQ6 148 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 LINC00596Q86U02 117 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 C1orf174Q8IYL3 243 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 OR10P1Q8NGE3 313 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 RNF2Q99496 336 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 MTIF3Q9H2K0 278 aaKnown RBP9.01□□□□□ -0.97
USP54-204ENST00000422491 TRAV9-1A0A075B6T8 112 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 C20orf202A1L168 122 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 ZNF716A6NP11 495 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 WDR1O75083 606 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 CD27P26842 260 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 RAC1P63000 192 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 ZNF709Q8N972 641 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 OR10G8Q8NGN5 311 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 ORAOV1Q8WV07 137 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 C22orf15Q8WYQ4 148 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 RAB1CQ92928 201 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 ZNF488Q96MN9 340 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 SAMD10Q9BYL1 202 aa9.01□□□□□ -0.97
USP54-204ENST00000422491 GAL3ST2Q9H3Q3 398 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms