RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 TGIF2LXQ8IUE1 241 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 CT45A3Q8NHU0 189 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 PNRC2Q9NPJ4 139 aaKnown RBP12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 OR1A1Q9P1Q5 309 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 FBLN5Q9UBX5 448 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 A0A1W2PPQ1 181 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 P2RY1P47900 373 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 REG1BP48304 166 aa12.08□□□□□ -0.48
SHROOM1-203ENST00000378679 H0YL77 283 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 HNF1AP20823 631 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 MALSU1Q96EH3 234 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 MARS2Q96GW9 593 aaKnown RBP12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 OR10C1Q96KK4 312 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 TMEM222Q9H0R3 208 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 C19orf12Q9NSK7 152 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 ELOVL5Q9NYP7 299 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 OR5AC2Q9NZP5 309 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 MT-ND4LP03901 98 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 DYNLT3P51808 116 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 FAM201AQ5SY85 155 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 DTX1Q86Y01 620 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 DTD1Q8TEA8 209 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 CABLES2Q9BTV7 478 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 ANKHD1Q8IWZ3 2542 aaKnown RBP12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 CRYM-AS1A6NIL9 109 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 DNASE2O00115 360 aaPredicted RBP12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 DBX2Q6ZNG2 339 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 ZNF383Q8NA42 475 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 NRIP2Q9BQI9 281 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 ASCL3Q9NQ33 180 aa12.07□□□□□ -0.48
SHROOM1-203ENST00000378679 A0A1B0GU03 582 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 PQLC2LA1A4F0 135 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 TMEM37Q8WXS4 190 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 RCC2Q9P258 522 aaKnown RBP12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 LPAR3Q9UBY5 353 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 NOTCH3Q9UM47 2321 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 KIR2DS2P43631 304 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 SNRNP40Q96DI7 357 aaKnown RBP12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 COL4A3Q01955 1670 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 ZNF727A8MUV8 499 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 PGLYRP1O75594 196 aaPredicted RBP12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 CD200P41217 278 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 RNF144BQ7Z419 303 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 MARVELD3Q96A59 401 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 POMT1Q9Y6A1 747 aa12.06□□□□□ -0.48
SHROOM1-203ENST00000378679 FAM157AC9JC47 383 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 SLC25A4P12235 298 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 WNT5AP41221 380 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 EWSR1Q01844 656 aaKnown RBP eCLIP12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 CXorf66Q5JRM2 361 aaPredicted RBP12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 OR4F5Q8NH21 305 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 OR4F4Q96R69 305 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 AP4M1O00189 453 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 SSTR5P35346 364 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 NHLH2Q02577 135 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 Q6ZS92 163 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 MUC15Q8N387 334 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 HARBI1Q96MB7 349 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 ABHD14AQ9BUJ0 271 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 CALYQ9NYX4 217 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 INSIG2Q9Y5U4 225 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 F6UZH7 168 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 RAB29O14966 203 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 CEACAM3P40198 252 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 GPR6P46095 362 aaPredicted RBP12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 DVL1P1P54792 670 aaPredicted RBP12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 BSPH1Q075Z2 132 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 PIP4P1Q86T03 277 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 TMPRSS5Q9H3S3 457 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 LPAR2Q9HBW0 351 aa12.05□□□□□ -0.48
SHROOM1-203ENST00000378679 IGKV1-12A0A0C4DH73 117 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 IQCF6A8MYZ5 107 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 H0Y980 276 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 IGKV1D-12P01611 117 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 RAB5AP20339 215 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 SULT1A1P50225 295 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 SRSF3P84103 164 aaKnown RBP12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 IZUMO4Q1ZYL8 232 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 FAM89BQ8N5H3 189 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 TMEM171Q8WVE6 324 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 LEAP2Q969E1 77 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 CHD9Q3L8U1 2897 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 A8MXK9 166 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 OR2A4O95047 310 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 OTX1P32242 354 aaPredicted RBP12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 FHITP49789 147 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 VSTM2AQ8TAG5 236 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 STARD4Q96DR4 205 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 ZNF714Q96N38 554 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 OR2A7Q96R45 310 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 HES4Q9HCC6 221 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 FKBP11Q9NYL4 201 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 A0A087X0M5 115 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 A0A1B0GX30 115 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 TAS2R45P59539 299 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 TBR1Q16650 682 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 FFAR4Q5NUL3 377 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 ZNF818PQ6ZRF7 136 aa12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 DAZAP1Q96EP5 407 aaKnown RBP12.04□□□□□ -0.48
SHROOM1-203ENST00000378679 DUXBA0A1W2PPF3 345 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms