RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 PLXDC1Q8IUK5 500 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TP53INP2Q8IXH6 220 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF101Q8IZC7 436 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TCEANCQ8N8B7 351 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZDHHC22Q8N966 263 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 JOSD2Q8TAC2 188 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 APOBEC3DQ96AK3 386 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MACROD1Q9BQ69 325 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 VN1R1Q9GZP7 353 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MAP1LC3BQ9GZQ8 125 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ACER3Q9NUN7 267 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 LHX3Q9UBR4 397 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 SLC23A2Q9UGH3 650 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 PKIGQ9Y2B9 76 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 DNAH12Q6ZR08 3092 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 A0A0J9YY10 115 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 A0A1B0GX78 115 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 A0A1W2PRF3 423 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 A0A1W2PRM7 423 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF860A6NHJ4 632 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 LILRA5A6NI73 299 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 HMGB3O15347 200 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 NKX2-8O15522 239 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TRAF3IP2O43734 574 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 IGLC1P0CG04 106 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MPC1LP0DKB6 136 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 IGLC2P0DOY2 106 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 IGLC3P0DOY3 106 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GNB3P16520 340 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 FSTP19883 344 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ATP6V0CP27449 155 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 P2RX1P51575 399 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 FOXA1P55317 472 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TPPP2P59282 170 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TAS2R31P59538 309 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MFGE8Q08431 387 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 IAH1Q2TAA2 248 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 FAM90A2PQ658T7 463 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF324BQ6AW86 544 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GUSBP11Q6P575 273 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF322Q6U7Q0 402 aaPredicted RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 Q6ZT83 130 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 OR4D11Q8NGI4 311 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 STAG3L4Q8TBR4 150 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 VN1R17PQ8TDU5 208 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 S100A16Q96FQ6 103 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 PCED1BQ96HM7 432 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 Q96MF0 132 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GPR82Q96P67 336 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 NIPSNAP3BQ9BS92 247 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 GTSF1LQ9H1H1 148 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MRPL16Q9NX20 251 aaKnown RBP4.29□□□□□ -1.72
UBE3D-202ENST00000369746 MED29Q9NX70 200 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 DNAJC27Q9NZQ0 273 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 TRAPPC2LQ9UL33 140 aa4.29□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF705FA8MVS1 300 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CLDN5O00501 218 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HSD17B6O14756 317 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 FOXH1O75593 365 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF705DP0CH99 300 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ZNF705BP0CI00 300 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 OR12D1P0DN82 309 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PSG1P11464 419 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PSG2P11465 335 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 RPL34P49207 117 aaKnown RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 GNG4P50150 75 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CLRN1P58418 232 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ARG2P78540 354 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 MRPS34P82930 218 aaKnown RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 COL10A1Q03692 680 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 MMDQ15546 238 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CD300EQ496F6 205 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 RTL6Q6ICC9 239 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 UFSP1Q6NVU6 142 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 FAM19A1Q7Z5A9 133 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 C1orf174Q8IYL3 243 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 OSR2Q8N2R0 312 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 OR5A1Q8NGJ0 315 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ITLN2Q8WWU7 325 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 RNF183Q96D59 192 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 AJUBAQ96IF1 538 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 NAA38Q9BRA0 125 aaKnown RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 EFCAB11Q9BUY7 163 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SH2D2AQ9NP31 389 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HRASLS2Q9NWW9 162 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 SPANXCQ9NY87 97 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 JKAMPQ9P055 326 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 NSG2Q9Y328 171 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 TNRC6AQ8NDV7 1962 aaKnown RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 A0A1B0GU03 582 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 VCYO14598 125 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CD5LO43866 347 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 HLA-AP01891 365 aaKnown RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 CTSDP07339 412 aaPredicted RBP4.28□□□□□ -1.72
UBE3D-202ENST00000369746 TACSTD2P09758 323 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 ERGP11308 486 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PRTN3P24158 256 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 PYCR1P32322 319 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 S100A3P33764 101 aa4.28□□□□□ -1.72
UBE3D-202ENST00000369746 TAS2R20P59543 309 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms