RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 PCNX1Q96RV3 2341 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A26D6RGX4 464 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 FFAR1O14842 300 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 C1QAP02745 245 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 LYZL2Q7Z4W2 148 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 OR10AC1Q8NH08 325 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 MUC1P15941 1255 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 NPBWR2P48146 333 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 HYAL1Q12794 435 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 C2orf83Q53S99 150 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 VCX2Q9H322 139 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 CCL28Q9NRJ3 127 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 ANAPC1Q9H1A4 1944 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 LIPT2A6NK58 231 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM177Q53S58 311 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 WDR25Q64LD2 544 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 ZCCHC14Q8WYQ9 949 aaKnown RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF665Q9H7R5 613 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 HOXB3P14651 431 aaPredicted RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 GABRG2P18507 467 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 GFRA1P56159 465 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 SOX8P57073 446 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 MESTQ5EB52 335 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 IBA57Q5T440 356 aaKnown RBP6.38□□□□□ -1.39
SYNE1-208ENST00000367256 SLC25A34Q6PIV7 304 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 RNF133Q8WVZ7 376 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 RNF7Q9UBF6 113 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 H0Y980 276 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 PRSS12P56730 875 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 LOXL3P58215 753 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 SELENOTP62341 195 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 LRRC75BQ2VPJ9 315 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 GUSBP11Q6P575 273 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 OR4A5Q8NH83 315 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 MAP1LC3AQ9H492 121 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 INSIG2Q9Y5U4 225 aa6.38□□□□□ -1.39
SYNE1-208ENST00000367256 IGHV5-51A0A0C4DH38 117 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 CDIPTO14735 213 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 HIKESHIQ53FT3 197 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 RSPO2Q6UXX9 243 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ATG4DQ86TL0 474 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF441Q8N8Z8 693 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ALKBH7Q9BT30 221 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PATE4P0C8F1 98 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 CYB5R2Q6BCY4 276 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM183AQ8IXX5 376 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 MS4A3Q96HJ5 214 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PGLYRP4Q96LB8 373 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 LRRK1Q38SD2 2015 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 GZMHP20718 246 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF418Q8TF45 676 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 HEXA-AS1Q9H8Q6 139 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 WIPI2Q9Y4P8 454 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM56-RWDD3S4R434 201 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TANC2Q9HCD6 1990 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 A0A0U1RQV5 110 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 S1PR2O95136 353 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 CT55Q8WUE5 264 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ADAMTS7Q9UKP4 1686 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 F12P00748 615 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 IL4P05112 153 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 OTX1P32242 354 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 RAB9AP51151 201 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ZIC1Q15915 447 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ZNF660Q6AZW8 331 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 MAFAQ8NHW3 353 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A10PA6NDY2 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A18PA6NE21 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A16PA6NEW6 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A20PA6NIJ5 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A8PA6NJQ4 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A7PA6NKC0 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A22PA8MWA6 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A12PA8MX19 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A5PA8MXJ8 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A23PA8MXZ1 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 J3QR06 171 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 AGFG2O95081 481 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A15PP0C7V4 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A13PP0C7W8 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A14PP0C7W9 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM90A24PP0C7X0 464 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 FAM219BQ5XKK7 198 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 VSTM2LQ96N03 204 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 WNT5BQ9H1J7 359 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ERVH48-1M5A8F1 160 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 WNT9BO14905 357 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 KLK2P20151 261 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 ATP6V0CP27449 155 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PSG9Q00887 426 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PTPMT1Q8WUK0 201 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PLAC1Q9HBJ0 212 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 GPR35Q9HC97 309 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TNCP24821 2201 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.37□□□□□ -1.398e-9■■■□□ 18.3
SYNE1-208ENST00000367256 CXCL10P02778 98 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 PSG6Q00889 435 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 TMEM45BQ96B21 275 aa6.37□□□□□ -1.39
SYNE1-208ENST00000367256 C19orf24Q9BVV8 132 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms