RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 H3BVH4 76 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 DNPH1O43598 174 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 FABP2P12104 132 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 EGR1P18146 543 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 NUDT16L1Q9BRJ7 211 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 MRPL37Q9BZE1 423 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 ONECUT1Q9UBC0 465 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 TSPAN2O60636 221 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 KIR2DL1P43626 348 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 RPL30P62888 115 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 FXYD3Q14802 87 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 SMIM8Q96KF7 97 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 SLC25A40Q8TBP6 338 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 PIKFYVEQ9Y2I7 2098 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 GNG7O60262 68 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 HPRT1P00492 218 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 CEACAM21Q3KPI0 293 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 FAM222BQ8WU58 562 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 A0A1W2PPE3 182 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 MS4A18H0YCH9 400 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 TMEM250H0YL14 139 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 MS4A18Q3C1V0 323 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 OR8B3Q8NGG8 313 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 RAB37Q96AX2 223 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 Q96M66 194 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 MOGAT3Q86VF5 341 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 RASL11BQ9BPW5 248 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 PRRX1P54821 245 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 SLC25A47Q6Q0C1 308 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 AP5S1Q9NUS5 200 aa16.85■□□□□ 0.29
CCDC88B-202ENST00000356786 ADRA2AP08913 450 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 DOLPP1Q86YN1 238 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 CDC42EP3Q9UKI2 254 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 PLXNA1Q9UIW2 1896 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 OR10S1Q8NGN2 331 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 SP7Q8TDD2 431 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 TDRD15B5MCY1 1934 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 CBLN1P23435 193 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 EPHA8P29322 1005 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 RCC1LQ96I51 464 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 OR2J1Q9GZK6 312 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 OR51B2Q9Y5P1 312 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 SRP19P09132 144 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 APELAP0DMC3 54 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 HERVK_113P61574 105 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 ASCL3Q9NQ33 180 aa16.84■□□□□ 0.29
CCDC88B-202ENST00000356786 ZNF716A6NP11 495 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 FHL5Q5TD97 284 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 MMD2Q8IY49 270 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 MYOZ3Q8TDC0 251 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 CTHRC1Q96CG8 243 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 SMIM12Q96EX1 92 aa16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 MARS2Q96GW9 593 aaKnown RBP16.83■□□□□ 0.29
CCDC88B-202ENST00000356786 GREM1O60565 184 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 SNCGO76070 127 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 FOLR2P14207 255 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 HOXB1P14653 301 aaPredicted RBP16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 SRSF3P84103 164 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 GBGT1Q8N5D6 347 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 OR1L1Q8NH94 360 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 RND1Q92730 232 aa16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 SNRNP40Q96DI7 357 aaKnown RBP16.83■□□□□ 0.28
CCDC88B-202ENST00000356786 ZNHIT1O43257 154 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 MAGEA5P43359 124 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 WDR74Q6RFH5 385 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 PRNTQ86SH4 94 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 TUBA4BQ9H853 241 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 KLF7O75840 302 aaPredicted RBP16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 TNFRSF9Q07011 255 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 SLC25A28Q96A46 364 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A26D6RGX4 464 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 RAMP1O60894 148 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 APOBEC4Q8WW27 367 aaKnown RBP16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 TMEM45BQ96B21 275 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 ARL14EPLP0DKL9 152 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 IL9P15248 144 aa16.82■□□□□ 0.28
CCDC88B-202ENST00000356786 SNAI3Q3KNW1 292 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 ZNF818PQ6ZRF7 136 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 BIVMQ86UB2 503 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 Q8WTZ3 238 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 IGHV3-21A0A0B4J1V1 117 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 CCL4P13236 92 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A10PA6NDY2 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A18PA6NE21 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A16PA6NEW6 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A20PA6NIJ5 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A8PA6NJQ4 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A7PA6NKC0 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 SHISA7A6NL88 538 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A22PA8MWA6 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A12PA8MX19 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A5PA8MXJ8 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A23PA8MXZ1 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 M0QZ24 198 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 ZG16O60844 167 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 CLDN14O95500 239 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A15PP0C7V4 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A13PP0C7W8 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A14PP0C7W9 464 aa16.81■□□□□ 0.28
CCDC88B-202ENST00000356786 FAM90A24PP0C7X0 464 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms