RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CEACAM8P31997 349 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 HLA-BQ31612 363 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 GCSAMLQ5JQS6 135 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 ZNF709Q8N972 641 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 CPEB3Q8NE35 698 aaKnown RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 SGCZQ96LD1 299 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 FGF21Q9NSA1 209 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 TMEM38BQ9NVV0 291 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SLC45A2Q9UMX9 530 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 WIPI2Q9Y4P8 454 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 IGHV1OR21-1A0A087WYE8 117 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 TRAV39A0A0B4J263 110 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 C20orf202A1L168 122 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 CBR3O75828 277 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 MYF5P13349 255 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 ZNF16P17020 682 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 HNF1AP20823 631 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 PTTG1IPP53801 180 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 MRPS21P82921 87 aaKnown RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 SSPNQ14714 243 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SPATA45Q537H7 98 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 LEMD1Q68G75 181 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 WDR74Q6RFH5 385 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 KMT5CQ86Y97 462 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 DEFB119Q8N690 84 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 Q8N7P7 452 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 OR4B1Q8NGF8 309 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 OR1L6Q8NGR2 347 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 RDH5Q92781 318 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SPACA9Q96E40 222 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 BTF3L4Q96K17 158 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 ALKBH3Q96Q83 286 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 TMEM147Q9BVK8 224 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 NPCDR1Q9BY65 106 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 SRXN1Q9BYN0 137 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 OR2H1Q9GZK4 316 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 MRPL18Q9H0U6 180 aaKnown RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 GAL3ST2Q9H3Q3 398 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 CHCHD2Q9Y6H1 151 aaPredicted RBP5.73□□□□□ -1.49
VPS39-202ENST00000348544 ADAMTS20P59510 1910 aa5.73□□□□□ -1.49
VPS39-202ENST00000348544 LOC105371242A0A075B767 164 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 AQP7O14520 342 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 ITGB1BP1O14713 200 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 HYPMO75409 117 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 IGLC2P0DOY2 106 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 IGLC3P0DOY3 106 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 COX5AP20674 150 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 S100GP29377 79 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 THBS3P49746 956 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 GPM6AP51674 278 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 KRTDAPP60985 99 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 HLA-DRB5Q30154 266 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 KRTCAP3Q53RY4 240 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 C1orf174Q8IYL3 243 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 LYG1Q8N1E2 194 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 UBALD1Q8TB05 177 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 ORAOV1Q8WV07 137 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 IL1F10Q8WWZ1 152 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 RLN3Q8WXF3 142 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 ZNF488Q96MN9 340 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 FAM103A1Q9BTL3 118 aaKnown RBP5.72□□□□□ -1.49
VPS39-202ENST00000348544 ZNF703Q9H7S9 590 aaPredicted RBP5.72□□□□□ -1.49
VPS39-202ENST00000348544 CLN8Q9UBY8 286 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 LAMTOR2Q9Y2Q5 125 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 DIDO1Q9BTC0 2240 aaKnown RBP5.72□□□□□ -1.49
VPS39-202ENST00000348544 KIAA1549Q9HCM3 1950 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 IGLV3-12A0A075B6K2 115 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TRAV38-1A0A0B4J264 116 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TRAV24A0A0B4J272 114 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 A0A0J9YW62 118 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 MDFIC2A0A1B0GVS7 189 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 DIRC3C9JPN6 131 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 F6UZH7 168 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.72□□□□□ -1.49
VPS39-202ENST00000348544 K7EP13 123 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 SYNGR1O43759 233 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 PDE6DO43924 150 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 VAMP5O95183 116 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TIAF1O95411 115 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 SYNGR4O95473 234 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 KRASP01116 189 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TIMP3P35625 211 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 CDKN1BP46527 198 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 CDC34P49427 236 aaPredicted RBP5.72□□□□□ -1.49
VPS39-202ENST00000348544 PSG7Q13046 419 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 SLC23A3Q6PIS1 610 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 BAGE3Q86Y29 109 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 BAGE2Q86Y30 109 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 C7orf61Q8IZ16 206 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 OR56B2PQ8NGI1 322 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 PSMF1Q92530 271 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 SPSB4Q96A44 273 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TECTBQ96PL2 329 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 RNF2Q99496 336 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 TMEM204Q9BSN7 226 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 LRFN3Q9BTN0 628 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 SAMD10Q9BYL1 202 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 ZNF391Q9UJN7 358 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 MMP17Q9ULZ9 603 aa5.72□□□□□ -1.49
VPS39-202ENST00000348544 KIAA0100Q14667 2235 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms