RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 OR4C12Q96R67 309 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 COL25A1Q9BXS0 654 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 PRDM14Q9GZV8 571 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF703Q9H7S9 590 aaPredicted RBP13.45□□□□□ -0.26
HMGA1-202ENST00000347617 CBLN4Q9NTU7 201 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 CACNG5Q9UF02 275 aa13.45□□□□□ -0.26
HMGA1-202ENST00000347617 YLPM1P49750 1951 aaKnown RBP13.44□□□□□ -0.26
HMGA1-202ENST00000347617 A0A0G2JRQ6 117 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 TMPRSS2O15393 492 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 TRAPPC6AO75865 159 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF32P17041 273 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM249Q2WGJ8 235 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 HAPLN4Q86UW8 402 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 OR10J5Q8NHC4 309 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 ZCCHC14Q8WYQ9 949 aaKnown RBP13.44□□□□□ -0.26
HMGA1-202ENST00000347617 MS4A10Q96PG2 267 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 TXNDC17Q9BRA2 123 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 ATG101Q9BSB4 218 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 OR2H1Q9GZK4 316 aa13.44□□□□□ -0.26
HMGA1-202ENST00000347617 RNF212BA8MTL3 300 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 MLNRO43193 412 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PDE6DO43924 150 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TNFSF13O75888 250 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 CD46P15529 392 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 COX5AP20674 150 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 ARL16Q0P5N6 197 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 WIPI1Q5MNZ9 446 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 RIPPLY2Q5TAB7 128 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PCSK4Q6UW60 755 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM14EPQ6UXP3 125 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 MOB1BQ7L9L4 216 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM144Q7Z5S9 345 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 CALHM1Q8IU99 346 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 C17orf78Q8N4C9 275 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 OR10V1Q8NGI7 309 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 OR4F5Q8NH21 305 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 GMPPAQ96IJ6 420 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 OR4F4Q96R69 305 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 MIEN1Q9BRT3 115 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM208Q9BTX3 173 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM147Q9BVK8 224 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 C1QTNF5Q9BXJ0 243 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TRAPPC1Q9Y5R8 145 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PXMP4Q9Y6I8 212 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PTPRBP23467 1997 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 CHD3Q12873 2000 aaKnown RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 F6UZH7 168 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 NXPH3O95157 252 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 ESDP10768 282 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 PSG2P11465 335 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 ELLP55199 621 aaPredicted RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TPPP2P59282 170 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 NRN1LQ496H8 165 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 LINC00696Q6ZRV3 163 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 RPP25LQ8N5L8 163 aaKnown RBP13.43□□□□□ -0.26
HMGA1-202ENST00000347617 NEK7Q8TDX7 302 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 ELOVL1Q9BW60 279 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 SRXN1Q9BYN0 137 aa13.43□□□□□ -0.26
HMGA1-202ENST00000347617 TNRC6AQ8NDV7 1962 aaKnown RBP13.42□□□□□ -0.26
HMGA1-202ENST00000347617 IGKV1-6A0A0C4DH72 117 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 TRAPPC2LH3BP13 241 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 IAPPP10997 89 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 BCL3P20749 454 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 IL3RAP26951 378 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 PSG4Q00888 419 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 IGFL2Q6UWQ7 119 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 TTTY12Q9BZ98 90 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 WNT5BQ9H1J7 359 aa13.42□□□□□ -0.26
HMGA1-202ENST00000347617 WDFY3Q8IZQ1 3526 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF705FA8MVS1 300 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-202ENST00000347617 HPRT1P00492 218 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF705DP0CH99 300 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF705BP0CI00 300 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-202ENST00000347617 YPEL3P61236 119 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-202ENST00000347617 PDCD1Q15116 288 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM183BQ1AE95 376 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 TEX43Q6ZNM6 134 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 OR10D3Q8NH80 312 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 UCN2Q96RP3 112 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF552Q9H707 407 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-202ENST00000347617 DLL3Q9NYJ7 618 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 PLA2G3Q9NZ20 509 aa13.41□□□□□ -0.26
HMGA1-202ENST00000347617 UBE2L5PA0A1B0GUS4 154 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 ZNF716A6NP11 495 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 C17orf112F2Z3M2 114 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 SLC33A1O00400 549 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-202ENST00000347617 SELENOTP62341 195 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 GNB2P62879 340 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 MSMO1Q15800 293 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TMEM178AQ8NBL3 297 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 OR10G9Q8NGN4 311 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 OR10G7Q8NGN6 311 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TBX15Q96SF7 602 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 KIAA2026Q5HYC2 2103 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-202ENST00000347617 TNFSF12O43508 249 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 CXCL13O43927 109 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 LHX2P50458 406 aa13.4□□□□□ -0.26
HMGA1-202ENST00000347617 CEACAM21Q3KPI0 293 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms