RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 LIMS1P48059 325 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 LHFPL6Q9Y693 200 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 PLXNB2O15031 1838 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 FAM186AA6NE01 2351 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 NPIPB6E9PJ23 425 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 SRSF9Q13242 221 aaKnown RBP eCLIP12.9□□□□□ -0.34
UBE3B-202ENST00000342494 TWIST1Q15672 202 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 BPIFA4PQ86YQ2 179 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 OPN4Q9UHM6 478 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 LAMB2P55268 1798 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 KCNAB3O43448 404 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 IFI6P09912 130 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 RND2P52198 227 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 PLAURQ03405 335 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 IRF3Q14653 427 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 DPH3Q96FX2 82 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 AMELYQ99218 206 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 KCNK7Q9Y2U2 307 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 PLAUP00749 431 aa12.9□□□□□ -0.34
UBE3B-202ENST00000342494 ACSF3Q4G176 576 aaPredicted RBP12.9□□□□□ -0.34
UBE3B-202ENST00000342494 ATP6V0CP27449 155 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 FAM27E3Q08E93 113 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 FUT5Q11128 374 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 ZNF880Q6PDB4 577 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 SCARF2Q96GP6 870 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 TMEM204Q9BSN7 226 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 THY1P04216 161 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 CD1AP06126 327 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 FCGR2BP31994 310 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 AWAT1Q58HT5 328 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 TIMM23BQ5SRD1 257 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 POM121Q96HA1 1249 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 KLF7O75840 302 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 COMPP49747 757 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 LEAP2Q969E1 77 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 SIGLEC12Q96PQ1 595 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 WNT5BQ9H1J7 359 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 TRAV30A0A087WSZ9 112 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 ZNF729A6NN14 1252 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 GDF9O60383 454 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 PITX3O75364 302 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 C1QCP02747 245 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 SMIM10L1P0DMW3 83 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 TMEM186Q96B77 213 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 SMIM10Q96HG1 83 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 B4DEV8 164 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 C4orf51C9J302 202 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 DLK1P80370 383 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 OR8A1Q8NGG7 326 aa12.89□□□□□ -0.35
UBE3B-202ENST00000342494 ZNF430Q9H8G1 570 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 AURKAIP1Q9NWT8 199 aaPredicted RBP12.89□□□□□ -0.35
UBE3B-202ENST00000342494 QSER1Q2KHR3 1735 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 M0R3E3 92 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 IER3P46695 156 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 VAX1Q5SQQ9 334 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 SCMH1Q96GD3 660 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 JPT1Q9UK76 154 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 SIRT4Q9Y6E7 314 aaPredicted RBP12.88□□□□□ -0.35
UBE3B-202ENST00000342494 SIAH2O43255 324 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 OR2A4O95047 310 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 CXCL3P19876 107 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 OR2A7Q96R45 310 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 PTGDSP41222 190 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 OR4C5Q8NGB2 326 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 APCSP02743 223 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 MEOX2P50222 304 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 ZNF703Q9H7S9 590 aaPredicted RBP12.88□□□□□ -0.35
UBE3B-202ENST00000342494 CACNA1GO43497 2377 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 KIAA1217Q5T5P2 1943 aa12.88□□□□□ -0.35
UBE3B-202ENST00000342494 SNURFLB1AK76 121 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 MPDU1O75352 247 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 PTBP3O95758 552 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 OR4C13Q8NGP0 309 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 RTN4RQ9BZR6 473 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 OR5AU1Q8NGC0 362 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 POLR2AP24928 1970 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 S1PR2O95136 353 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 ISG15P05161 165 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 SEC11BP0C7V7 166 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 RPL29P47914 159 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 TMEM105Q8N8V8 129 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 NEURL2Q9BR09 285 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 RFPL3SP0C7P2 107 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 GLRXP35754 106 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 SNRPEP62304 92 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 EEF1AKMT3Q96AZ1 226 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 QTRT1Q9BXR0 403 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 TMEM222Q9H0R3 208 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 HSPB7Q9UBY9 170 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 HSPB8Q9UJY1 196 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 RAXQ9Y2V3 346 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 MARF1Q9Y4F3 1742 aaKnown RBP12.87□□□□□ -0.35
UBE3B-202ENST00000342494 NPIPB11E5RHQ5 1161 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 SSTR5P35346 364 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 GLIPR1P48060 266 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 FXYD3Q14802 87 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 TMEM30BQ3MIR4 351 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 SAXO1Q8IYX7 474 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 FAM168AQ92567 244 aa12.87□□□□□ -0.35
UBE3B-202ENST00000342494 SERF2P84101 59 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms