RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 ZNF645Q8N7E2 425 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 OR1P1Q8NH06 330 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 OR5P3Q8WZ94 311 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 NCOR1O75376 2440 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 UBE2CO00762 179 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 NDUFB4O95168 129 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 CXorf1O96002 111 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 CRYGSP22914 178 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 RPEL1Q2QD12 228 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 OR4P4Q8NGL7 312 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 GMPPAQ96IJ6 420 aaPredicted RBP12.59□□□□□ -0.39
TCOF1-201ENST00000323668 WDR61Q9GZS3 305 aaKnown RBP12.59□□□□□ -0.39
TCOF1-201ENST00000323668 TMEM167BQ9NRX6 74 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 CLCF1Q9UBD9 225 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 IGKV1-12A0A0C4DH73 117 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 IGKV1D-12P01611 117 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 UCP2P55851 309 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 ID3Q02535 119 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 DEFB109BQ30KR1 87 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 NABP1Q96AH0 204 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 ICE1Q9Y2F5 2266 aa12.59□□□□□ -0.39
TCOF1-201ENST00000323668 C5orf52A6NGY3 159 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 TMEM250H0YL14 139 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 KBTBD11O94819 623 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 AGFG2O95081 481 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 DDTP30046 118 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 NRN1LQ496H8 165 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 ZIC4Q8N9L1 334 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 OR4D5Q8NGN0 318 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 CLDND2Q8NHS1 167 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 TMEM45BQ96B21 275 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 IGKV1D-13A0A0B4J2D9 117 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 IGKV1-13P0DP09 117 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 CCL20P78556 96 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 UMODP07911 640 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 SRP14P37108 136 aaKnown RBP12.58□□□□□ -0.4
TCOF1-201ENST00000323668 AMTP48728 403 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 WDR73Q6P4I2 378 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 Q8WTZ3 238 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 MPDU1O75352 247 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 NPY1RP25929 384 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 KLF3P57682 345 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-201ENST00000323668 PARLQ9H300 379 aa12.58□□□□□ -0.4
TCOF1-201ENST00000323668 FOXD3Q9UJU5 478 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-201ENST00000323668 PSG5Q15238 335 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 FAM162BQ5T6X4 162 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF385CQ66K41 422 aaPredicted RBP12.57□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF826PQ6ZT77 177 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 RNF166Q96A37 237 aaPredicted RBP12.57□□□□□ -0.4
TCOF1-201ENST00000323668 NOL4LQ96MY1 436 aaPredicted RBP12.57□□□□□ -0.4
TCOF1-201ENST00000323668 HES7Q9BYE0 225 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 DEFA4P12838 97 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 PTGDSP41222 190 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 TEPPQ6URK8 271 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 TPPP3Q9BW30 176 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 TECRQ9NZ01 308 aaKnown RBP12.57□□□□□ -0.4
TCOF1-201ENST00000323668 A0A0G2JMM0 328 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 A0A1W2PPB8 328 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 A0A1W2PRS3 328 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 KIR3DP1A8MWS1 328 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 HPRT1P00492 218 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 MST1LQ2TV78 715 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 TXNDC17Q9BRA2 123 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 SRD5A3Q9H8P0 318 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 IL36RNQ9UBH0 155 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 ZG16O60844 167 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 COL10A1Q03692 680 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 LRRC75BQ2VPJ9 315 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 CDCP2Q5VXM1 449 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 ACSM6Q6P461 480 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 NPVFQ9HCQ7 196 aa12.57□□□□□ -0.4
TCOF1-201ENST00000323668 K7EQM0 130 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 CHEK1O14757 476 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 RAB29O14966 203 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 GCGP01275 180 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 CSRP1P21291 193 aaKnown RBP12.56□□□□□ -0.4
TCOF1-201ENST00000323668 ICAM4Q14773 271 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 HES3Q5TGS1 186 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 STUMQ69YW2 141 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 DEFB123Q8N688 67 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 RHOVQ96L33 236 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 TCAPO15273 167 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 ZNF253O75346 499 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 CLDN14O95500 239 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 TNFRSF1AP19438 455 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 OR10J1P30954 320 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 PRDX2P32119 198 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 HES4Q9HCC6 221 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 H0Y8G0 127 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 CEBPDP49716 269 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-201ENST00000323668 SPCS3P61009 180 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 HIST3H3Q16695 136 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 COX19Q49B96 90 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 COA4Q9NYJ1 87 aa12.56□□□□□ -0.4
TCOF1-201ENST00000323668 IGKV1-27A0A075B6S5 117 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 PROB1E7EW31 1015 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 CNIH1O95406 144 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 WFDC8Q8IUA0 241 aa12.55□□□□□ -0.4
TCOF1-201ENST00000323668 C1orf147Q96MC9 270 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-201ENST00000323668 FANCMQ8IYD8 2048 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms