RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LINC00587B1AMM8 73 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 SLC22A18ASQ8N1D0 253 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 FAM216AQ8WUB2 273 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 LOC390937A0A1W2PQ73 354 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 F5H697 171 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 M0QZ24 198 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 GNG7O60262 68 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 CLDN14O95500 239 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 COX7A1P24310 79 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 CLDN18P56856 261 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 PKIBQ9C010 78 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 SBF2Q86WG5 1849 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 TDRD15B5MCY1 1934 aaKnown RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 RPL30P62888 115 aaKnown RBP11.07□□□□□ -0.64
COL3A1-201ENST00000304636 LINC00469Q8N7U9 141 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 GRAMD2BQ96HH9 432 aa11.07□□□□□ -0.64
COL3A1-201ENST00000304636 SRP19P09132 144 aaKnown RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 CCL4P13236 92 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 PRDX2P32119 198 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SNRNP40Q96DI7 357 aaKnown RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 RTBDNQ9BSG5 229 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SLC25A33Q9BSK2 321 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF646O15015 1829 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 COL11A2P13942 1736 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 ORM1P02763 201 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 LEMD1Q68G75 181 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 ASPHD2Q6ICH7 369 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SLC35E4Q6ICL7 350 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 GALNT14Q96FL9 552 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SFRP2Q96HF1 295 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 CRISPLD2Q9H0B8 497 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 C5orf52A6NGY3 159 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 MNX1P50219 401 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 LCN2P80188 198 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 MIC13Q5XKP0 118 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 MYOZ3Q8TDC0 251 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SCARF2Q96GP6 870 aaPredicted RBP11.06□□□□□ -0.64
COL3A1-201ENST00000304636 IER2Q9BTL4 223 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 AGFG2O95081 481 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 GFRALQ6UXV0 394 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 LINC00114Q6XXX2 140 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 C1orf174Q8IYL3 243 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 SPSB4Q96A44 273 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 TM2D1Q9BX74 207 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 DLL3Q9NYJ7 618 aa11.06□□□□□ -0.64
COL3A1-201ENST00000304636 TRGV8A0A0C4DH27 118 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SHISA7A6NL88 538 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 MGST3O14880 152 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SOD3P08294 240 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 PCP4P48539 62 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 PSMB2P49721 201 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 BIVMQ86UB2 503 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SP7Q8TDD2 431 aaPredicted RBP11.05□□□□□ -0.64
COL3A1-201ENST00000304636 Q8WTZ3 238 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 LEPROTL1O95214 131 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 HIGD1AQ9Y241 93 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 TRIP12Q14669 1992 aaPredicted RBP11.05□□□□□ -0.64
COL3A1-201ENST00000304636 J3QRE1 110 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 HYPMO75409 117 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 ARL14EPLP0DKL9 152 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 FOLR2P14207 255 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SLC25A34Q6PIV7 304 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 ASCL5Q7RTU5 278 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 MRPL37Q9BZE1 423 aaKnown RBP11.05□□□□□ -0.64
COL3A1-201ENST00000304636 TAF1LQ8IZX4 1826 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SOX8P57073 446 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 SELENOTP62341 195 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 GPHA2Q96T91 129 aa11.05□□□□□ -0.64
COL3A1-201ENST00000304636 KIAA0100Q14667 2235 aaKnown RBP11.05□□□□□ -0.64
COL3A1-201ENST00000304636 F8VVB4 439 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 F8VWA3 439 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 FGF16O43320 207 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 LY6G6FQ5SQ64 297 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 RPRMQ9NS64 109 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 LOC101059948A0A1B0GTJ6 334 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF716A6NP11 495 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 C21orf140B9A014 251 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 SRIP30626 198 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF600Q6ZNG1 722 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 GLRX5Q86SX6 157 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 OR10S1Q8NGN2 331 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 PRDM14Q9GZV8 571 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 CEACAM18A8MTB9 384 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 NMUP48645 174 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 SRSF9Q13242 221 aaKnown RBP eCLIP11.04□□□□□ -0.64
COL3A1-201ENST00000304636 PRNTQ86SH4 94 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 MMD2Q8IY49 270 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 RCC1LQ96I51 464 aaKnown RBP11.04□□□□□ -0.64
COL3A1-201ENST00000304636 ZG16O60844 167 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 IGFBP3P17936 291 aaPredicted RBP11.04□□□□□ -0.64
COL3A1-201ENST00000304636 RELBQ01201 579 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 TFF2Q03403 129 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 RIPPLY2Q5TAB7 128 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 ZDHHC8Q9ULC8 765 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 ZNF236Q9UL36 1845 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 C10orf128Q5T292 105 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 RNF126Q9BV68 326 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 HEXA-AS1Q9H8Q6 139 aa11.04□□□□□ -0.64
COL3A1-201ENST00000304636 GRIFINA4D1Z8 144 aa11.03□□□□□ -0.64
COL3A1-201ENST00000304636 OR4A8P0C604 315 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 278.8 ms