RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ZNF645Q8N7E2 425 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 ANKRD20A5PA0PJZ0 165 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 FFAR1O14842 300 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 SEZ6L2Q6UXD5 910 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 RBFOX2O43251 390 aaKnown RBP eCLIP8.13□□□□□ -1.116e-7■■■□□ 18.3
CUX1-201ENST00000292535 MFAP4P55083 255 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 OGG1O15527 345 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 C16orf47Q6ZP98 133 aaPredicted RBP8.13□□□□□ -1.11
CUX1-201ENST00000292535 TMEM183AQ8IXX5 376 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 COX14Q96I36 57 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 MAP1LC3AQ9H492 121 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 FUT9Q9Y231 359 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 FABP2P12104 132 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 ATP5J2P56134 94 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 TMPRSS3P57727 454 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 PLP1P60201 277 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 CCL3P10147 92 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 LIFP15018 202 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 MFAP2P55001 183 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 MTURNQ8N3F0 131 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 GCSAMQ8N6F7 178 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 SOSTQ9BQB4 213 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 PRDX2P32119 198 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 TMEM92Q6UXU6 159 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 SH3BGRL3Q9H299 93 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 COL22A1Q8NFW1 1626 aaPredicted RBP8.13□□□□□ -1.11
CUX1-201ENST00000292535 WNT2BQ93097 391 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 LSM10Q969L4 123 aaKnown RBP8.13□□□□□ -1.11
CUX1-201ENST00000292535 GBF1Q92538 1859 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 TCRBV16S1A1N1A0A5B0 115 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 MEX3AA1L020 520 aaKnown RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 H7C2G1 150 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 LOC107984156A0A0G2JMH3 177 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 A0A0U1RQV5 110 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 GDF9O60383 454 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 STARD6P59095 220 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 RPS4XP62701 263 aaKnown RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 ARL17AQ8IVW1 177 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 DDA1Q9BW61 102 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 HSPB7Q9UBY9 170 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 ZNF236Q9UL36 1845 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 AESQ08117 197 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 ISXQ2M1V0 245 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 TUBA4BQ9H853 241 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 IGKV3-7A0A075B6H7 116 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 MEIG1Q5JSS6 88 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 TCL1AP56279 114 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 OR4A47Q6IF82 309 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 SERGEFQ9UGK8 458 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 PAM16Q9Y3D7 125 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 XIRP1Q702N8 1843 aaKnown RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 ITGBL1O95965 494 aaPredicted RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 H1FOOQ8IZA3 346 aaPredicted RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 CCL19Q99731 98 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 PPIAL4EA0A075B759 164 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 PPIAL4DF5H284 164 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 PPIAL4FP0DN26 164 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 NMUP48645 174 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 R3HDMLQ9H3Y0 253 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 PPIAL4AQ9Y536 164 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 NKX2-6A6NCS4 301 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 FGF5P12034 268 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 ZNF385DQ9H6B1 395 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 CHODLQ9H9P2 273 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 HOXB1P14653 301 aaPredicted RBP8.12□□□□□ -1.11
CUX1-201ENST00000292535 XAF1Q6GPH4 301 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 UNQ5815/PRO19632Q6UWF5 114 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 JMJD1CQ15652 2540 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 CACNG7P62955 275 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 MMD2Q8IY49 270 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 LINC01555Q8NAE3 123 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 GUCD1Q96NT3 240 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 ZNF205O95201 554 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 TSPO2Q5TGU0 170 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 LOXL4Q96JB6 756 aa8.12□□□□□ -1.11
CUX1-201ENST00000292535 ADAMTSL3P82987 1691 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 H7C1H1 209 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 HIKESHIQ53FT3 197 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 MYEOVQ96EZ4 313 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 A0A1W2PQM1 296 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 DIRC3C9JPN6 131 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 DUX5Q96PT3 197 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 TRBV9A0A0B4J1U6 114 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 NPFFO15130 113 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 CTDSPLO15194 276 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 PAGE4O60829 102 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 PRSS41Q7RTY9 318 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 ALX4Q9H161 411 aaPredicted RBP8.11□□□□□ -1.11
CUX1-201ENST00000292535 YBX2Q9Y2T7 364 aaKnown RBP8.11□□□□□ -1.11
CUX1-201ENST00000292535 KIAA1551Q9HCM1 1747 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 LEUTXA8MZ59 168 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 OR1K1Q8NGR3 316 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 AQP10Q96PS8 301 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 REG1BP48304 166 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 TTTY12Q9BZ98 90 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 PMCHL1Q16048 86 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 MESTQ5EB52 335 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 IBA57Q5T440 356 aaKnown RBP8.11□□□□□ -1.11
CUX1-201ENST00000292535 PRSS27Q9BQR3 290 aa8.11□□□□□ -1.11
CUX1-201ENST00000292535 C17orf51A8MQB3 221 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms