RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RPL13AP40429 203 aaKnown RBP9.26□□□□□ -0.93
CD44-201ENST00000263398 SELENOTP62341 195 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 UNC119Q13432 240 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 ZNF645Q8N7E2 425 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 DDA1Q9BW61 102 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 MAP1LC3CQ9BXW4 147 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 TRGC2P03986 189 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 MFAP2P55001 183 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 PCOLCEQ15113 449 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 SELENOHQ8IZQ5 122 aaKnown RBP9.26□□□□□ -0.93
CD44-201ENST00000263398 POC1AQ8NBT0 407 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 PAXXQ9BUH6 204 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 TMUB1Q9BVT8 246 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 COA4Q9NYJ1 87 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 AHRRA9YTQ3 701 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 DANCRP0C864 163 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 SCGB1C2P0DMR2 95 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 RPL30P62888 115 aaKnown RBP9.26□□□□□ -0.93
CD44-201ENST00000263398 CCL8P80075 99 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 PQLC2Q6ZP29 291 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 OR52M1Q8NGK5 317 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 WNT5BQ9H1J7 359 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 NAGKQ9UJ70 344 aa9.26□□□□□ -0.93
CD44-201ENST00000263398 RGPD3A6NKT7 1758 aaPredicted RBP9.25□□□□□ -0.93
CD44-201ENST00000263398 ZNF716A6NP11 495 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 PRR33A8MZF0 331 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 APCSP02743 223 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 MELTFP08582 738 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 ACAA1P09110 424 aaPredicted RBP9.25□□□□□ -0.93
CD44-201ENST00000263398 MDKP21741 143 aaPredicted RBP9.25□□□□□ -0.93
CD44-201ENST00000263398 WNT5AP41221 380 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 STARD6P59095 220 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 MMDQ15546 238 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 VWA1Q6PCB0 445 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 DOLPP1Q86YN1 238 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 CXorf65A6NEN9 183 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 H0YL77 283 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 CORTO00230 105 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 ZNF708P17019 499 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 SRP14P37108 136 aaKnown RBP9.25□□□□□ -0.93
CD44-201ENST00000263398 RND3P61587 244 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 TMEM116Q8NCL8 245 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 FAM222BQ8WU58 562 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 PAM16Q9Y3D7 125 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 C17orf51A8MQB3 221 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 HYPMO75409 117 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 ORM1P02763 201 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 COX6A1P12074 109 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 HIST1H1BP16401 226 aaKnown RBP9.25□□□□□ -0.93
CD44-201ENST00000263398 KLK2P20151 261 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 REG1BP48304 166 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 PAFAH1B2P68402 229 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 TMEM187Q14656 261 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 ZNF826PQ6ZT77 177 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 OR8G5Q8NG78 346 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 DIRC2Q96SL1 478 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 RBKSQ9H477 322 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 CLEC5AQ9NY25 188 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 UFC1Q9Y3C8 167 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 SBF1O95248 1867 aa9.25□□□□□ -0.93
CD44-201ENST00000263398 WDR90Q96KV7 1748 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 ODAMA1E959 279 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 SH2D7A6NKC9 451 aaPredicted RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 A8MWL6 223 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 F2RL2O00254 374 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 HOXD4P09016 255 aaPredicted RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 MC5RP33032 325 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 RPL27AP46776 148 aaKnown RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 ZP1P60852 638 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 DHRS11Q6UWP2 260 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 VN1R17PQ8TDU5 208 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 AICDAQ9GZX7 198 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 TBX6O95947 436 aaPredicted RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 WNT2BQ93097 391 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 LSM10Q969L4 123 aaKnown RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 CCL13Q99616 98 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 TNFRSF9Q07011 255 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 RTP5Q14D33 572 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 CCDC144NLQ6NUI1 221 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 ZNF788Q6ZQV5 615 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 ZNF714Q96N38 554 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 TBX15Q96SF7 602 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 GPHA2Q96T91 129 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 IGKV3D-11A0A0A0MRZ8 115 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 MPTX1A8MV57 137 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 CDX4O14627 284 aaPredicted RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 SUCLG1P53597 346 aaKnown RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 LINC00114Q6XXX2 140 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 HSPB8Q9UJY1 196 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 ABCA7Q8IZY2 2146 aa9.24□□□□□ -0.93
CD44-201ENST00000263398 MDC1Q14676 2089 aaKnown RBP9.24□□□□□ -0.93
CD44-201ENST00000263398 KIF26BQ2KJY2 2108 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 CEACAM18A8MTB9 384 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 DNASE2O00115 360 aaPredicted RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 NPBWR2P48146 333 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 PPOXP50336 477 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 LILRB1Q8NHL6 650 aaPredicted RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 ITLN1Q8WWA0 313 aa9.23□□□□□ -0.93
CD44-201ENST00000263398 SNRNP40Q96DI7 357 aaKnown RBP9.23□□□□□ -0.93
CD44-201ENST00000263398 SRXN1Q9BYN0 137 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms