RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 RPP25LQ8N5L8 163 aaKnown RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 ACACAQ13085 2346 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BKO60814 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 PTBP3O95758 552 aaKnown RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HBZP02008 142 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BJP06899 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 BCL2P10415 239 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BOP23527 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BBP33778 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BDP58876 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BCP62807 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST2H2BEQ16778 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BHQ93079 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BNQ99877 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 HIST1H2BMQ99879 126 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 RIMS4Q9H426 269 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 TACC2O95359 2948 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 LRP5LA4QPB2 252 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 TIMM8AO60220 97 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 COX5BP10606 129 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 FAM209BQ5JX69 171 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 ACSM6Q6P461 480 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 EDARADDQ8WWZ3 215 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 NANOS1Q8WY41 292 aaKnown RBP17.91■□□□□ 0.46
TRIM28-201ENST00000253024 GGACTQ9BVM4 153 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 TUBA4BQ9H853 241 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 AKAP13Q12802 2813 aa17.91■□□□□ 0.46
TRIM28-201ENST00000253024 CRYAAP02489 173 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 FAM201AQ5SY85 155 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF610Q8N9Z0 462 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 FRZBQ92765 325 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 DDA1Q9BW61 102 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 KCNIP1Q9NZI2 227 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 TMEM265A0A087WTH1 108 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 ODAMA1E959 279 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF737O75373 536 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 HSPB1P04792 205 aaKnown RBP17.9■□□□□ 0.46
TRIM28-201ENST00000253024 SOD3P08294 240 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 PGA5P0DJD9 388 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 HNF1AP20823 631 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 PYY3Q5JQD4 70 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 UTF1Q5T230 341 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 NINJ1Q92982 152 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 GALMQ96C23 342 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 ZNF251Q9BRH9 671 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 TOLLIPQ9H0E2 274 aa17.9■□□□□ 0.46
TRIM28-201ENST00000253024 LIN7CQ9NUP9 197 aaKnown RBP17.9■□□□□ 0.46
TRIM28-201ENST00000253024 FABP4P15090 132 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 S100PP25815 95 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 ZPBPQ9BS86 351 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 GAB2Q9UQC2 676 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 C19orf67A6NJJ6 358 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 PPIHO43447 177 aaKnown RBP17.89■□□□□ 0.45
TRIM28-201ENST00000253024 S100A8P05109 93 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 SMIM6P0DI80 62 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 RAC2P15153 192 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 MDS2Q8NDY4 140 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 OR13A1Q8NGR1 328 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 SMIM7Q9BQ49 75 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 GPR87Q9BY21 358 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 UNKLQ9H9P5 680 aaKnown RBP17.89■□□□□ 0.45
TRIM28-201ENST00000253024 GP6Q9HCN6 339 aa17.89■□□□□ 0.45
TRIM28-201ENST00000253024 HBG1P69891 147 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 HBG2P69892 147 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 TAF15Q92804 592 aaKnown RBP eCLIP17.88■□□□□ 0.451e-6■□□□□ 9.7
TRIM28-201ENST00000253024 FAM210BQ96KR6 192 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 CABLES2Q9BTV7 478 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 ELOVL1Q9BW60 279 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 WDR61Q9GZS3 305 aaKnown RBP17.88■□□□□ 0.45
TRIM28-201ENST00000253024 TNCP24821 2201 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 OTOGLQ3ZCN5 2332 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 LINC00473A8K010 186 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 HBE1P02100 147 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 TRGC1P0CF51 173 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 FGF7P21781 194 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 YPEL4Q96NS1 127 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 WFIKKN1Q96NZ8 548 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 SP9P0CG40 484 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 PAX6P26367 422 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 TNFRSF9Q07011 255 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 FDCSPQ8NFU4 85 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 OR4F5Q8NH21 305 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 OR4F4Q96R69 305 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 POLDIP2Q9Y2S7 368 aa17.88■□□□□ 0.45
TRIM28-201ENST00000253024 S100A2P29034 98 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 KHDC3LQ587J8 217 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 NKX6-1P78426 367 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-201ENST00000253024 COL10A1Q03692 680 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 SPRNQ5BIV9 151 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 ABHD5Q8WTS1 349 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 CA5BP1Q8WTZ4 195 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 COQ2Q96H96 371 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 RHOVQ96L33 236 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 PKIBQ9C010 78 aa17.87■□□□□ 0.45
TRIM28-201ENST00000253024 SEBOXQ9HB31 216 aaPredicted RBP17.87■□□□□ 0.45
TRIM28-201ENST00000253024 PGPEP1LA6NFU8 196 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 SELLP14151 372 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 BRWD1-AS2P59051 145 aa17.86■□□□□ 0.45
TRIM28-201ENST00000253024 MRPL49Q13405 166 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms