RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 IGKV1-5P01602 117 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 LYNX1P0DP58 116 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 ZNF16P17020 682 aaPredicted RBP18.7■□□□□ 0.58
CDX1-201ENST00000231656 C14orf79Q96F83 325 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 GAFA1Q96PS6 74 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 PPIAL4EA0A075B759 164 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 A0A1B0GW55 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 PPIAL4DF5H284 164 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L2P0CJ85 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L3P0CJ86 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L4P0CJ87 422 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L5P0CJ88 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L6P0CJ89 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L7P0CJ90 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 PPIAL4FP0DN26 164 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4L9Q6RFH8 374 aaPredicted RBP18.7■□□□□ 0.58
CDX1-201ENST00000231656 CLEC9AQ6UXN8 241 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 SMIM3Q9BZL3 60 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 DUX4Q9UBX2 424 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 PPIAL4AQ9Y536 164 aa18.7■□□□□ 0.58
CDX1-201ENST00000231656 CENPEQ02224 2701 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 TEX46H3BTG2 121 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 LGALS8O00214 317 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 SSSCA1O60232 199 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 JTBO76095 146 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 LY6HO94772 140 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 CGB3P0DN86 165 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 CGB7P0DN87 165 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 RPL30P62888 115 aaKnown RBP18.69■□□□□ 0.58
CDX1-201ENST00000231656 HSD17B13Q7Z5P4 300 aaPredicted RBP18.69■□□□□ 0.58
CDX1-201ENST00000231656 LRRC20Q8TCA0 184 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 MAGT1Q9H0U3 335 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 OR6C3Q9NZP0 311 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 JPT1Q9UK76 154 aa18.69■□□□□ 0.58
CDX1-201ENST00000231656 TRAV38-1A0A0B4J264 116 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 F2RL2O00254 374 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 GYPAP02724 150 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 FGF2P09038 288 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 MMP9P14780 707 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 PVALBP20472 110 aaPredicted RBP18.68■□□□□ 0.58
CDX1-201ENST00000231656 EPHA1P21709 976 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 COL8A1P27658 744 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 EDDM3BP56851 147 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 ZNF788Q6ZQV5 615 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 Q6ZRM9 215 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 OR2C3Q8N628 320 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 AGMATQ9BSE5 352 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 WFDC1Q9HC57 220 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 SPG11Q96JI7 2443 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 KIAA1324LA8MWY0 1029 aaPredicted RBP18.68■□□□□ 0.58
CDX1-201ENST00000231656 FAM157CP0CG43 387 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 ZNF295-AS1Q8N0V1 137 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 EIF4E3Q8N5X7 224 aaKnown RBP18.68■□□□□ 0.58
CDX1-201ENST00000231656 UBAC2Q8NBM4 344 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 FAM234AQ9H0X4 552 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 ARV1Q9H2C2 271 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 ZNF665Q9H7R5 613 aa18.68■□□□□ 0.58
CDX1-201ENST00000231656 CELSR2Q9HCU4 2923 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 OVOL3O00110 214 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 ST8SIA5O15466 376 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 LOXL3P58215 753 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 MRPS11P82912 194 aaKnown RBP18.67■□□□□ 0.58
CDX1-201ENST00000231656 EWSR1Q01844 656 aaKnown RBP eCLIP18.67■□□□□ 0.58
CDX1-201ENST00000231656 LTC4SQ16873 150 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 IZUMO4Q1ZYL8 232 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 RNASE11Q8TAA1 199 aaKnown RBP18.67■□□□□ 0.58
CDX1-201ENST00000231656 FAM216AQ8WUB2 273 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 RNF141Q8WVD5 230 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 IGFBPL1Q8WX77 278 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 CCL13Q99616 98 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 LYRM2Q9NU23 88 aaPredicted RBP18.67■□□□□ 0.58
CDX1-201ENST00000231656 CALYQ9NYX4 217 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 PSG11Q9UQ72 335 aa18.67■□□□□ 0.58
CDX1-201ENST00000231656 IGSF23A1L1A6 192 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 FAM24AA6NFZ4 105 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 A8MXK9 166 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 YPEL1O60688 119 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 TMEM50AO95807 157 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 DAOP14920 347 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 LPAR6P43657 344 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 NHLH2Q02577 135 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 C17orf58Q2M2W7 97 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 MORN2Q502X0 79 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 EDARADDQ8WWZ3 215 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 YPEL2Q96QA6 119 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 CACNG5Q9UF02 275 aa18.66■□□□□ 0.58
CDX1-201ENST00000231656 NDUFS7O75251 213 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 NXPH3O95157 252 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 AKR1C2P52895 323 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 CATR1Q13166 79 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 EIF5AL1Q6IS14 154 aaKnown RBP18.65■□□□□ 0.58
CDX1-201ENST00000231656 FAM216BQ8N7L0 139 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 GNG12Q9UBI6 72 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 GCN1Q92616 2671 aaKnown RBP18.65■□□□□ 0.58
CDX1-201ENST00000231656 SIGLEC5O15389 551 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 RAMP3O60896 148 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 BRWD1-AS2P59051 145 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 VAMP2P63027 116 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 BTNL3Q6UXE8 466 aa18.65■□□□□ 0.58
CDX1-201ENST00000231656 ZNF66Q6ZN08 573 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms