RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 KCNE4Q8WWG9 221 aa13□□□□□ -0.33
UPF1-204ENST00000596842 SMIM7Q9BQ49 75 aa13□□□□□ -0.33
UPF1-204ENST00000596842 LRRC3CA6NJW4 275 aa13□□□□□ -0.33
UPF1-204ENST00000596842 TRIM61Q5EBN2 209 aa13□□□□□ -0.33
UPF1-204ENST00000596842 FAM103A1Q9BTL3 118 aaKnown RBP13□□□□□ -0.33
UPF1-204ENST00000596842 PPIAL4AQ9Y536 164 aa13□□□□□ -0.33
UPF1-204ENST00000596842 TIMM8BQ9Y5J9 83 aaPredicted RBP13□□□□□ -0.33
UPF1-204ENST00000596842 TPRP12270 2363 aaKnown RBP12.99□□□□□ -0.33
UPF1-204ENST00000596842 LOC102723996A0A087X1L8 192 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 SYNGR2O43760 224 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 SYNGR4O95473 234 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 TFF1P04155 84 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 CD55P08174 381 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 CD82P27701 267 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 MAGEA5P43359 124 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 ASCL4Q6XD76 172 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 SNHG12Q9BXW3 62 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 SAMD10Q9BYL1 202 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 RBKSQ9H477 322 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 PPP1R14DQ9NXH3 145 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 OR2W1Q9Y3N9 320 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 HSPB1P04792 205 aaKnown RBP12.99□□□□□ -0.33
UPF1-204ENST00000596842 IL24Q13007 206 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 RTP5Q14D33 572 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 LBHQ53QV2 105 aaPredicted RBP12.99□□□□□ -0.33
UPF1-204ENST00000596842 FAM58AQ8N1B3 248 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 ADGRG7Q96K78 797 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 PRSS47A8MTI9 375 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 GLIPR1P48060 266 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 ZNF709Q8N972 641 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 SNIP1Q8TAD8 396 aaKnown RBP12.99□□□□□ -0.33
UPF1-204ENST00000596842 TCFL5Q9UL49 500 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 NCKAP5O14513 1909 aa12.99□□□□□ -0.33
UPF1-204ENST00000596842 MAP1LC3B2A6NCE7 125 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 DBX2Q6ZNG2 339 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 RAB24Q969Q5 203 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 NEU1Q99519 415 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 MAP1LC3BQ9GZQ8 125 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 ASCL3Q9NQ33 180 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 SERPINA7P05543 415 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 CEACAM21Q3KPI0 293 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 ZNF506Q5JVG8 444 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 OR10V1Q8NGI7 309 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 PLPPR1Q8TBJ4 325 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 TMEM18Q96B42 140 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 C1QTNF5Q9BXJ0 243 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 CLDN34H7C241 214 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 NAPSAO96009 420 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 BCL2P10415 239 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 CEACAM6P40199 344 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 BAXQ07812 192 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 APH1AQ96BI3 265 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 RCC1LQ96I51 464 aaKnown RBP12.98□□□□□ -0.33
UPF1-204ENST00000596842 OR4C12Q96R67 309 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 REPIN1Q9BWE0 567 aaKnown RBP12.98□□□□□ -0.33
UPF1-204ENST00000596842 ZNF391Q9UJN7 358 aa12.98□□□□□ -0.33
UPF1-204ENST00000596842 ZFHX4Q86UP3 3567 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 CLEC18AA5D8T8 446 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 PPP5D1E7EU14 171 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 IGHV3-13P01766 116 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 IGHV3-7P01780 117 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 SAPCD1Q5SSQ6 148 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 CLEC18CQ8NCF0 446 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 MRPL30Q8TCC3 161 aaKnown RBP12.97□□□□□ -0.33
UPF1-204ENST00000596842 APOBEC3DQ96AK3 386 aaPredicted RBP12.97□□□□□ -0.33
UPF1-204ENST00000596842 FAM234AQ9H0X4 552 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 IL36GQ9NZH8 169 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 LOC102723971A0A1B0GUV8 181 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 H0Y980 276 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 IQCJQ1A5X6 159 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 PPP1R32Q7Z5V6 425 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 TPRX1Q8N7U7 411 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 ABHD5Q8WTS1 349 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 GATAD1Q8WUU5 269 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 DLL3Q9NYJ7 618 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 TRAV24A0A0B4J272 114 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 KIAA1324LA8MWY0 1029 aaPredicted RBP12.97□□□□□ -0.33
UPF1-204ENST00000596842 ZNF737O75373 536 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 EGR1P18146 543 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 CLEC2AQ6UVW9 174 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 TBX15Q96SF7 602 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 PLSCR2Q9NRY7 297 aa12.97□□□□□ -0.33
UPF1-204ENST00000596842 CDIPTO14735 213 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 NXPH2O95156 264 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 WNT5AP41221 380 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 LINC00205P59089 165 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 ABHD17BQ5VST6 288 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 OR5D13Q8NGL4 314 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 OR4F5Q8NH21 305 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 BTF3L4Q96K17 158 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 OR4F4Q96R69 305 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 CLN8Q9UBY8 286 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 RFESDQ8TAC1 157 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 MALSU1Q96EH3 234 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 NOL4LQ96MY1 436 aaPredicted RBP12.96□□□□□ -0.33
UPF1-204ENST00000596842 PRSS50Q9UI38 385 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 RNF115Q9Y4L5 304 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 ZNF318Q5VUA4 2279 aa12.96□□□□□ -0.33
UPF1-204ENST00000596842 SPTBN2O15020 2390 aa12.96□□□□□ -0.34
UPF1-204ENST00000596842 DEFB108AA8MXU0 73 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms