RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TMEM144Q7Z5S9 345 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TMED4Q7Z7H5 227 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 BAP18Q8IXM2 172 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 DEFB125Q8N687 156 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 MIR7-3HGQ8N6C7 128 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TMEM105Q8N8V8 129 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 OR10X1Q8NGY0 326 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 OR4A5Q8NH83 315 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 LHFPL5Q8TAF8 219 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 CMBLQ96DG6 245 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 MS4A6EQ96DS6 147 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 SLC25A44Q96H78 314 aaPredicted RBP1.34□□□□□ -2.19
CHD3-217ENST00000574022 SFRP2Q96HF1 295 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 IP6K3Q96PC2 410 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 SIGMAR1Q99720 223 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TSSK6Q9BXA6 273 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 KRTAP4-7Q9BYR0 210 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 DCSTAMPQ9H295 470 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 VCXQ9H320 206 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 FAM96AQ9H5X1 160 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 LINC00574Q9H8X3 128 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 MRPL40Q9NQ50 206 aaKnown RBP1.34□□□□□ -2.19
CHD3-217ENST00000574022 INIPQ9NRY2 104 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 KCNIP2Q9NS61 270 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 PRR34Q9NV39 138 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 GID8Q9NWU2 228 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TAS2R1Q9NYW7 299 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 NYAP2Q9P242 653 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TP53TG3Q9ULZ0 132 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 PKIGQ9Y2B9 76 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 CARHSP1Q9Y2V2 147 aaKnown RBP1.34□□□□□ -2.19
CHD3-217ENST00000574022 PRELID3BQ9Y3B1 194 aa1.34□□□□□ -2.19
CHD3-217ENST00000574022 TICRRQ7Z2Z1 1910 aa1.34□□□□□ -2.2
CHD3-217ENST00000574022 BAZ2AQ9UIF9 1905 aaKnown RBP1.34□□□□□ -2.2
CHD3-217ENST00000574022 TDRD6O60522 2096 aaKnown RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 PBRM1Q86U86 1689 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 COL2A1P02458 1487 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 A0A087WUJ7 227 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 TMED7-TICAM2A0A0A6YYA0 188 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 IGKV1-12A0A0C4DH73 117 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZNF850A8MQ14 1090 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZNF878C9JN71 531 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 H0YJX3 145 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 M0R381 172 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 BET1O15155 118 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 GSTZ1O43708 216 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 OR2B3O76000 313 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 MT-CO2P00403 227 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 IGKV1D-12P01611 117 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 IGLV3-27P01718 113 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 OPN1SWP03999 348 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 OR4E1P0C645 316 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 CCL1P22362 96 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 MPV17P39210 176 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 CA7P43166 264 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 GZMMP51124 257 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 LINC00313P59037 77 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 HIST1H3AP68431 136 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 BTN3A2P78410 334 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 H3F3AP84243 136 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZNF816Q0VGE8 651 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 FUT5Q11128 374 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 KRR1Q13601 381 aaKnown RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 PMAIP1Q13794 54 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 POU6F1Q14863 301 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 LINC00483Q53H64 154 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 SBSNQ6UWP8 590 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 LYG2Q86SG7 212 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 AKAP14Q86UN6 197 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 SGPP2Q8IWX5 399 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 SPANXA2-OT1Q8N9U9 137 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZFP62Q8NB50 900 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 LY6G5BQ8NDX9 201 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 OR11G2Q8NGC1 345 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 OR2T27Q8NH04 317 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 NEK7Q8TDX7 302 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 FAM172AQ8WUF8 416 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 BORCS7Q96B45 105 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 PYURFQ96I23 114 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 B9D2Q9BPU9 175 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 C1orf50Q9BV19 199 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 KIFC1Q9BW19 673 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 GABARAPL1Q9H0R8 117 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 NMNAT1Q9HAN9 279 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZNF286AQ9HBT8 521 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ENY2Q9NPA8 101 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 PAQR5Q9NXK6 330 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 ZNF230Q9UIE0 474 aaPredicted RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 VPREB3Q9UKI3 123 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ANAPC10Q9UM13 185 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 MRPS16Q9Y3D3 137 aaKnown RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 FAM32AQ9Y421 112 aaKnown RBP1.33□□□□□ -2.2
CHD3-217ENST00000574022 PHLDA3Q9Y5J5 127 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 TRAPPC1Q9Y5R8 145 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 PXMP4Q9Y6I8 212 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 SMAD5-AS1Q9Y6J3 95 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 BRWD3Q6RI45 1802 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ATAD5Q96QE3 1844 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 ROCK1Q13464 1354 aa1.33□□□□□ -2.2
CHD3-217ENST00000574022 WRNQ14191 1432 aaPredicted RBP eCLIP1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms