RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 B4DEV8 164 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 CYB5R2Q6BCY4 276 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 TECTBQ96PL2 329 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 CISD1Q9NZ45 108 aaKnown RBP12.32□□□□□ -0.44
VPS35-210ENST00000568784 FGFRL1Q8N441 504 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 MAFAQ8NHW3 353 aaPredicted RBP12.32□□□□□ -0.44
VPS35-210ENST00000568784 PRDM13Q9H4Q3 707 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 IL36GQ9NZH8 169 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 FZR1Q9UM11 496 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 NAPSAO96009 420 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 ZNF726P1Q15940 193 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 FOXL2NBQ6ZUU3 175 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 PARLQ9H300 379 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 TRAV24A0A0B4J272 114 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 LINC00205P59089 165 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 OR8G1Q15617 311 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 MSMO1Q15800 293 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 ZDHHC16Q969W1 377 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 REPIN1Q9BWE0 567 aaKnown RBP12.31□□□□□ -0.44
VPS35-210ENST00000568784 FGF23Q9GZV9 251 aaPredicted RBP12.31□□□□□ -0.44
VPS35-210ENST00000568784 WDR54Q9H977 334 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 ZNF705AQ6ZN79 300 aaPredicted RBP12.31□□□□□ -0.44
VPS35-210ENST00000568784 ODF3L1Q8IXM7 274 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 OR1P1Q8NH06 330 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 CDH20Q9HBT6 801 aa12.31□□□□□ -0.44
VPS35-210ENST00000568784 FREM2Q5SZK8 3169 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 PGPEP1LA6NFU8 196 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 IFNL4K9M1U5 179 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 ASCL4Q6XD76 172 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 H2BFWTQ7Z2G1 175 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 OR51G1Q8NGK1 321 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 PLPPR1Q8TBJ4 325 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 RNF138Q8WVD3 245 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 C1QTNF5Q9BXJ0 243 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 RIMS4Q9H426 269 aaPredicted RBP12.3□□□□□ -0.44
VPS35-210ENST00000568784 MSL2Q9HCI7 577 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 DCAF12Q5T6F0 453 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 GCNT2Q8N0V5 402 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 MRGPRDQ8TDS7 321 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 PINX1Q96BK5 328 aaKnown RBP12.3□□□□□ -0.44
VPS35-210ENST00000568784 TCFL5Q9UL49 500 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 RNF115Q9Y4L5 304 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 A0A1B0GW64 132 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 ZNF503-AS2A6NEH8 195 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 IGKV1-5P01602 117 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 ARG2P78540 354 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 ZNF826PQ6ZT77 177 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 RPP25LQ8N5L8 163 aaKnown RBP12.3□□□□□ -0.44
VPS35-210ENST00000568784 OR5A2Q8NGI9 324 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 OR2T10Q8NGZ9 312 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 OR1L1Q8NH94 360 aa12.3□□□□□ -0.44
VPS35-210ENST00000568784 WDR61Q9GZS3 305 aaKnown RBP12.3□□□□□ -0.44
VPS35-210ENST00000568784 SPINK4O60575 86 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 ZG16O60844 167 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 REC114Q7Z4M0 266 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 OR52L2PQ8NGH6 319 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 IL22RA2Q969J5 263 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 ACTR3CQ9C0K3 210 aaPredicted RBP12.29□□□□□ -0.44
VPS35-210ENST00000568784 PRDM14Q9GZV8 571 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 LRP5LA4QPB2 252 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 C1QTNF9BB2RNN3 333 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 RAMP3O60896 148 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 DKK1O94907 266 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 OR2H2O95918 312 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 GYPAP02724 150 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 TFF3Q07654 80 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 DRAM1Q8N682 238 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 MISP3Q96FF7 219 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 MED13Q9UHV7 2174 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 TRAV38-1A0A0B4J264 116 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 DUXBA0A1W2PPF3 345 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 GALR2O43603 387 aaPredicted RBP12.29□□□□□ -0.44
VPS35-210ENST00000568784 AMBPP02760 352 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 FGF5P12034 268 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 SLC25A6P12236 298 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 COX5AP20674 150 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 RPL29P47914 159 aaKnown RBP12.29□□□□□ -0.44
VPS35-210ENST00000568784 B3GALT5-AS1P59052 145 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 UBE2NP61088 152 aaKnown RBP12.29□□□□□ -0.44
VPS35-210ENST00000568784 AESQ08117 197 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 RIPPLY2Q5TAB7 128 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 PCSK4Q6UW60 755 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 TGIF2LXQ8IUE1 241 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 OR8G5Q8NG78 346 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 RAB24Q969Q5 203 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 TMEM18Q96B42 140 aa12.29□□□□□ -0.44
VPS35-210ENST00000568784 C10orf142B7Z368 130 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 C11orf94C9JXX5 98 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 CD33P20138 364 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 KCNIP4Q6PIL6 250 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 ABHD14BQ96IU4 210 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 A0A1B0GUS0 222 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 MT-CO3P00414 261 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 PDLIM3Q53GG5 364 aaPredicted RBP12.28□□□□□ -0.44
VPS35-210ENST00000568784 ZNF324BQ6AW86 544 aaPredicted RBP12.28□□□□□ -0.44
VPS35-210ENST00000568784 OR2J1Q9GZK6 312 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 HEYLQ9NQ87 328 aaPredicted RBP12.28□□□□□ -0.44
VPS35-210ENST00000568784 IGKV1-39P01597 117 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 IGKV1D-39P04432 117 aa12.28□□□□□ -0.44
VPS35-210ENST00000568784 MPLP40238 635 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms