RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 DUX4L9Q6RFH8 374 aaPredicted RBP9.65□□□□□ -0.86
LDLR-212ENST00000560467 TMED4Q7Z7H5 227 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 CCDC71LQ8N9Z2 235 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 TOMM40LQ969M1 308 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 CABLES2Q9BTV7 478 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 SLC5A7Q9GZV3 580 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 RDH8Q9NYR8 311 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 ONECUT1Q9UBC0 465 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 DUX4Q9UBX2 424 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 RPUSD1Q9UJJ7 312 aaKnown RBP9.65□□□□□ -0.86
LDLR-212ENST00000560467 ZNF221Q9UK13 617 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 NUP50Q9UKX7 468 aa9.65□□□□□ -0.86
LDLR-212ENST00000560467 SOX21Q9Y651 276 aaPredicted RBP9.65□□□□□ -0.86
LDLR-212ENST00000560467 ARHGAP32A7KAX9 2087 aa9.65□□□□□ -0.87
LDLR-212ENST00000560467 IGHV3OR16-10A0A075B7F0 116 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 F5H0A9 414 aaPredicted RBP9.64□□□□□ -0.87
LDLR-212ENST00000560467 F2RL2O00254 374 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 ARPC1BO15143 372 aaKnown RBP9.64□□□□□ -0.87
LDLR-212ENST00000560467 PEX14O75381 377 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 PPYP01298 95 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 ZNF735P0CB33 412 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 ANXA3P12429 323 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 AADACP22760 399 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 SSTR5P35346 364 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 PRRX1P54821 245 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 UCP3P55916 312 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 C4orf46Q504U0 113 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 HEPN1Q6WQI6 88 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 ZNF841Q6ZN19 808 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 SECTM1Q8WVN6 248 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 MOB3AQ96BX8 217 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 ZNF486Q96H40 463 aaPredicted RBP9.64□□□□□ -0.87
LDLR-212ENST00000560467 C20orf85Q9H1P6 137 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 MMP28Q9H239 520 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 LINC00574Q9H8X3 128 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 KCNIP3Q9Y2W7 256 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 AUP1Q9Y679 476 aa9.64□□□□□ -0.87
LDLR-212ENST00000560467 VWFP04275 2813 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 CMYA5Q8N3K9 4069 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 TEX13DA0A0J9YY54 714 aaPredicted RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 MEX3AA1L020 520 aaKnown RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 C15orf65H3BRN8 121 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 YPEL1O60688 119 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 RNASE1P07998 156 aaKnown RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 MDKP21741 143 aaPredicted RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 IL3RAP26951 378 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 ERVFRD-1P60508 538 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 UBE2MP61081 183 aaKnown RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 SLC9A3R2Q15599 337 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 METTL11BQ5VVY1 283 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 C1orf122Q6ZSJ8 110 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 H1FOOQ8IZA3 346 aaPredicted RBP9.63□□□□□ -0.87
LDLR-212ENST00000560467 ZBTB34Q8NCN2 500 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 OR52L2PQ8NGH6 319 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 OR10V1Q8NGI7 309 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 OR13D1Q8NGV5 346 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 C8orf46Q8TAG6 207 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 UBALD1Q8TB05 177 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 MARCH1Q8TCQ1 289 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 AKR1E2Q96JD6 320 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 YPEL2Q96QA6 119 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 MARVELD1Q9BSK0 173 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 HEXA-AS1Q9H8Q6 139 aa9.63□□□□□ -0.87
LDLR-212ENST00000560467 M0R1W7 72 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 GPR31O00270 319 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 CTSDP07339 412 aaPredicted RBP9.62□□□□□ -0.87
LDLR-212ENST00000560467 OR8U9P0C7N5 309 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 CGB3P0DN86 165 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 CGB7P0DN87 165 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 IGHV4-38-2P0DP08 117 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 AKR1C4P17516 323 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 OMGP23515 440 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 PPP1CCP36873 323 aaKnown RBP9.62□□□□□ -0.87
LDLR-212ENST00000560467 GPR12P47775 334 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 RAB25P57735 213 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 Q3ZCU0 254 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 LY6G6FQ5SQ64 297 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 LHFPL1Q86WI0 220 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 SGPP2Q8IWX5 399 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 KIR3DL3Q8N743 410 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 OR13C8Q8NGS7 320 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 OR10X1Q8NGY0 326 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 OR8U1Q8NH10 309 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 S1PR3Q99500 378 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 ALX4Q9H161 411 aaPredicted RBP9.62□□□□□ -0.87
LDLR-212ENST00000560467 METTL8Q9H825 291 aaKnown RBP9.62□□□□□ -0.87
LDLR-212ENST00000560467 GFOD1Q9NXC2 390 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 OR1A1Q9P1Q5 309 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 INSIG2Q9Y5U4 225 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 SESN1Q9Y6P5 492 aa9.62□□□□□ -0.87
LDLR-212ENST00000560467 WNK1Q9H4A3 2382 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 IGHV3-43A0A0B4J1X8 118 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 IGKV1-6A0A0C4DH72 117 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 MDFIC2A0A1B0GVS7 189 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 OR5H14A6NHG9 310 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 C17orf98A8MV24 154 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 CLDN34H7C241 214 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 ITGB1BP1O14713 200 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 TUSC2O75896 110 aa9.61□□□□□ -0.87
LDLR-212ENST00000560467 IGHV3-43DP0DP04 118 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms