RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SERPINE2P07093 398 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 VDAC1P21796 283 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 IER3P46695 156 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 TLE1Q04724 770 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF658BQ4V348 819 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 ZNF418Q8TF45 676 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 CT55Q8WUE5 264 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 C8orf44Q96CB5 159 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 MBD6Q96DN6 1003 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 C1orf147Q96MC9 270 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 STRADBQ9C0K7 418 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 PNRC2Q9NPJ4 139 aaKnown RBP11.78□□□□□ -0.52
SHMT2-226ENST00000556825 EMC9Q9Y3B6 208 aa11.78□□□□□ -0.52
SHMT2-226ENST00000556825 DOCK9Q9BZ29 2069 aa11.77□□□□□ -0.52
SHMT2-226ENST00000556825 IGKV1D-8A0A087WSZ0 117 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 ADH4P08319 380 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 HIST1H1TP22492 207 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-226ENST00000556825 NPPCP23582 126 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 NTHL1P78549 312 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 TGFBR3Q03167 851 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 GAGE5Q13069 117 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 GAGE6Q13070 117 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 CXorf66Q5JRM2 361 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-226ENST00000556825 WDR74Q6RFH5 385 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-226ENST00000556825 RNF44Q7L0R7 432 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 GALMQ96C23 342 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF501Q96CX3 271 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-226ENST00000556825 B4GALT6Q9UBX8 382 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 TRAPPC2LQ9UL33 140 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 HS3ST2Q9Y278 367 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 SELENOKQ9Y6D0 94 aa11.77□□□□□ -0.53
SHMT2-226ENST00000556825 LRP5LA4QPB2 252 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 SLC31A1O15431 190 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 PHF1O43189 567 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-226ENST00000556825 HLA-DQA2P01906 255 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 GLI4P10075 376 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 CRYBB3P26998 211 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 OTPQ5XKR4 325 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 ASTLQ6HA08 431 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-226ENST00000556825 FA2HQ7L5A8 372 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 SPATA12Q7Z6I5 190 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 DCAF4L2Q8NA75 395 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 OR10AG1Q8NH19 301 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 VSTM2AQ8TAG5 236 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 GPR82Q96P67 336 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 CITED1Q99966 193 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 OR10A2Q9H208 303 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 IL36BQ9NZH7 164 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 KCNIP1Q9NZI2 227 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 ERG28Q9UKR5 140 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 KIAA2026Q5HYC2 2103 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 H3BUT2 72 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 FAM87AP0C7U9 286 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 CEBPBP17676 345 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 NTF3P20783 257 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 UBE2G1P62253 170 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 ID3Q02535 119 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 CTXN3Q4LDR2 81 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 OR4N5Q8IXE1 308 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 RNF183Q96D59 192 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 HARBI1Q96MB7 349 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 C19orf24Q9BVV8 132 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 HCSTQ9UBK5 93 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 PLAGL1Q9UM63 463 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 HEATR5BQ9P2D3 2071 aa11.76□□□□□ -0.53
SHMT2-226ENST00000556825 FAM181BA6NEQ2 426 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 SLC22A20A6NK97 555 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 TNFRSF13BO14836 293 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-226ENST00000556825 DEGS1O15121 323 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 SLC25A6P12236 298 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 GPR183P32249 361 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 EMDP50402 254 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 LGALS4P56470 323 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 PHLDA2Q53GA4 152 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 DCAF12Q5T6F0 453 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 EBLN2Q6P2I7 272 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 CBLN3Q6UW01 205 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 CHRDL2Q6WN34 429 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 DOLPP1Q86YN1 238 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 OR10G8Q8NGN5 311 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 LIME1Q9H400 295 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 DNAJB12Q9NXW2 375 aaKnown RBP11.75□□□□□ -0.53
SHMT2-226ENST00000556825 SPTBP11277 2137 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 CHST1O43916 411 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 MT-ND6P03923 174 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 CELA3AP09093 270 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 NTSR1P30989 418 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 SSTR5P35346 364 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 REG1BP48304 166 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 PAX9P55771 341 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 RPL32P62910 135 aaKnown RBP11.75□□□□□ -0.53
SHMT2-226ENST00000556825 RSPO2Q6UXX9 243 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-226ENST00000556825 FAM57BQ71RH2 274 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 ZNF439Q8NDP4 499 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 C18orf32Q8TCD1 76 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 GATAD1Q8WUU5 269 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 RAB1CQ92928 201 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 ADAT3Q96EY9 351 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-226ENST00000556825 YAE1D1Q9NRH1 226 aa11.75□□□□□ -0.53
SHMT2-226ENST00000556825 ATG2AQ2TAZ0 1938 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms