RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 OR10J5Q8NHC4 309 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 SGCZQ96LD1 299 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 PYGO2Q9BRQ0 406 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 AGMATQ9BSE5 352 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 PHF7Q9BWX1 381 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-212ENST00000552491 GPR87Q9BY21 358 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 PARD6GQ9BYG4 376 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-212ENST00000552491 MAP1LC3BQ9GZQ8 125 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 DLL3Q9NYJ7 618 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 PLA2G3Q9NZ20 509 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 NAT8Q9UHE5 227 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 LAMP3Q9UQV4 416 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 ZFHX4Q86UP3 3567 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 UBE2L5PA0A1B0GUS4 154 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 LRP5LA4QPB2 252 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 A8MWP6 167 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SLC31A2O15432 143 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SS18L1O75177 396 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 FOSL1P15407 271 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF16P17020 682 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 IGFBP4P22692 258 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 GFRA1P56159 465 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TAS2R60P59551 318 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 RPS16P62249 146 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 RELBQ01201 579 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 IL11RAQ14626 422 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM41BQ5BJD5 291 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 COA6Q5JTJ3 125 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 NCR3LG1Q68D85 454 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 MRPL21Q7Z2W9 205 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 CENPVQ7Z7K6 275 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 LINC00596Q86U02 117 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR10V1Q8NGI7 309 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR51G1Q8NGK1 321 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR2Y1Q8NGV0 311 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR1P1Q8NH06 330 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 RNASE11Q8TAA1 199 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR5P3Q8WZ94 311 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 RPUSD4Q96CM3 377 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 HIST1H2AAQ96QV6 131 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SMIM7Q9BQ49 75 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 ACTR3CQ9C0K3 210 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR51B6Q9H340 312 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SLC25A22Q9H936 323 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 MRPS17Q9Y2R5 130 aaKnown RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 ASPMQ8IZT6 3477 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 CD300LBA8K4G0 201 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 P04436 131 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 CELA3AP09093 270 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 FGF7P21781 194 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TUBG1P23258 451 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SRYQ05066 204 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SSX2Q16385 188 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM241Q24JQ0 296 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR8G2PQ6IF36 304 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 Q6P435 159 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 CYP2G1PQ6ZSU1 146 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TGIF2LYQ8IUE0 185 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 LILRB2Q8N423 598 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SPEM1Q8N4L4 309 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 OR5A2Q8NGI9 324 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 IFI44Q8TCB0 444 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 PSMF1Q92530 271 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 TAF15Q92804 592 aaKnown RBP eCLIP4.58□□□□□ -1.68
LIMA1-212ENST00000552491 LHX4Q969G2 390 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 WFIKKN1Q96NZ8 548 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 KRTAP4-12Q9BQ66 201 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 C2orf88Q9BSF0 95 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 PCGF1Q9BSM1 259 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 SLC39A9Q9NUM3 307 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 PRSS50Q9UI38 385 aa4.58□□□□□ -1.68
LIMA1-212ENST00000552491 MED13Q9UHV7 2174 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 PRRC2CQ9Y520 2896 aaKnown RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 IGHV3-64DA0A0J9YX35 117 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM250H0YL14 139 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 RAMP3O60896 148 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 WDR1O75083 606 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 KBTBD11O94819 623 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 NPPCP23582 126 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 GDF1P27539 372 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 CEACAM6P40199 344 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 WNT5AP41221 380 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 GNB2P62879 340 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 HOXA4Q00056 320 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 MEF2BQ02080 365 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 SLC38A11Q08AI6 406 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 BSXQ3C1V8 233 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 Q3ZCU0 254 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM14EPQ6UXP3 125 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 PPP1R32Q7Z5V6 425 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TUSC5Q8IXB3 177 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 FAM58AQ8N1B3 248 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 TMEM45BQ96B21 275 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 C5orf30Q96GV9 206 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 POM121L2Q96KW2 1035 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 NOL4LQ96MY1 436 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-212ENST00000552491 STRADBQ9C0K7 418 aa4.57□□□□□ -1.68
LIMA1-212ENST00000552491 PARLQ9H300 379 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms