RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 G6PCP35575 357 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 RPL30P62888 115 aaKnown RBP13.32□□□□□ -0.28
LDLR-204ENST00000545707 SLC10A1Q14973 349 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 ZNF826PQ6ZT77 177 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 OR10D4PQ8NGN7 298 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 FAM210BQ96KR6 192 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 WDR61Q9GZS3 305 aaKnown RBP13.32□□□□□ -0.28
LDLR-204ENST00000545707 HIPK2Q9H2X6 1198 aa13.32□□□□□ -0.28
LDLR-204ENST00000545707 COL27A1Q8IZC6 1860 aaPredicted RBP13.31□□□□□ -0.28
LDLR-204ENST00000545707 MAP1LC3B2A6NCE7 125 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 TRGC1P0CF51 173 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 HBG1P69891 147 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 HBG2P69892 147 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 SPINK9Q5DT21 86 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 C9orf152Q5JTZ5 239 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 GCNT2Q8N0V5 402 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 RPP25LQ8N5L8 163 aaKnown RBP13.31□□□□□ -0.28
LDLR-204ENST00000545707 MBD3L1Q8WWY6 194 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 C5orf30Q96GV9 206 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 ZPBPQ9BS86 351 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 MAP1LC3BQ9GZQ8 125 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 LIN7CQ9NUP9 197 aaKnown RBP13.31□□□□□ -0.28
LDLR-204ENST00000545707 GAR1Q9NY12 217 aaKnown RBP13.31□□□□□ -0.28
LDLR-204ENST00000545707 CLN8Q9UBY8 286 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 CXorf65A6NEN9 183 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 NPIPB11E5RHQ5 1161 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 OR3A1P47881 315 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 ERVK11-1P61568 191 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 PPP1CBP62140 327 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 SLC38A11Q08AI6 406 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 OR52L2PQ8NGH6 319 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 TAF15Q92804 592 aaKnown RBP eCLIP13.31□□□□□ -0.28
LDLR-204ENST00000545707 SPRR3Q9UBC9 169 aa13.31□□□□□ -0.28
LDLR-204ENST00000545707 KMT2EQ8IZD2 1858 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 LYZL6O75951 148 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 DEFA4P12838 97 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 S100A2P29034 98 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 BTNL3Q6UXE8 466 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 TMPRSS7Q7RTY8 843 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 SLC25A40Q8TBP6 338 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 GATAD1Q8WUU5 269 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 DDA1Q9BW61 102 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 SDF2L1Q9HCN8 221 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 TINAGQ9UJW2 476 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 USF3Q68DE3 2245 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 DOCK11Q5JSL3 2073 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 LRP5LA4QPB2 252 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 SMPD2O60906 423 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 ZNF737O75373 536 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 AESQ08117 197 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 TBC1D28Q2M2D7 210 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 TMEM41BQ5BJD5 291 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 TPRX1Q8N7U7 411 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 OR10G4Q8NGN3 311 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 LHX4Q969G2 390 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 PSMG3Q9BT73 122 aaPredicted RBP13.3□□□□□ -0.28
LDLR-204ENST00000545707 OR2D2Q9H210 308 aa13.3□□□□□ -0.28
LDLR-204ENST00000545707 SH2D1BO14796 132 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 PGA5P0DJD9 388 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 PMP22Q01453 160 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 CLEC12BQ2HXU8 276 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 NECAP1Q8NC96 275 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 SLC25A22Q9H936 323 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 MBNL3Q9NUK0 354 aaKnown RBP13.29□□□□□ -0.28
LDLR-204ENST00000545707 SLC39A9Q9NUM3 307 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 LNP1A1A4G5 178 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 CLDN34H7C241 214 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 WISP2O76076 250 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 MPLP40238 635 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 NKX6-1P78426 367 aaPredicted RBP13.29□□□□□ -0.28
LDLR-204ENST00000545707 TNFRSF9Q07011 255 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 PSG7Q13046 419 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 ACSM6Q6P461 480 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 ZNF383Q8NA42 475 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 ZDHHC16Q969W1 377 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 VAX2Q9UIW0 290 aa13.29□□□□□ -0.28
LDLR-204ENST00000545707 C19orf67A6NJJ6 358 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 C12orf77C9JDV5 145 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 HAND1O96004 215 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 CYB5R3P00387 301 aaPredicted RBP13.28□□□□□ -0.28
LDLR-204ENST00000545707 MPV17P39210 176 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 CD81P60033 236 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 SERF2P84101 59 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 ADIRFQ15847 76 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 WDR25Q64LD2 544 aaPredicted RBP13.28□□□□□ -0.28
LDLR-204ENST00000545707 MOB1BQ7L9L4 216 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 C1orf87Q8N0U7 546 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 RPUSD4Q96CM3 377 aaKnown RBP13.28□□□□□ -0.28
LDLR-204ENST00000545707 GPR87Q9BY21 358 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 FZR1Q9UM11 496 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 BOD1L1Q8NFC6 3051 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 C17orf98A8MV24 154 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 B4DEV8 164 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 KLRC4-KLRK1H3BQV0 150 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 PPP1R2P9O14990 202 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 S1PR2O95136 353 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 BRWD1-AS2P59051 145 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 ZNF146Q15072 292 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 TMEM164Q5U3C3 297 aa13.28□□□□□ -0.28
LDLR-204ENST00000545707 Q6ZR03 302 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms