RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 TUBD1Q9UJT1 453 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 HS3ST1O14792 307 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 ADAM20O43506 726 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 SYNGR3O43761 229 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 SCTP09683 121 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF16P17020 682 aaPredicted RBP12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 CTSSP25774 331 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 OR5C1Q8NGR4 320 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 TMEM171Q8WVE6 324 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF488Q96MN9 340 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 ELOVL1Q9BW60 279 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 TMEM38BQ9NVV0 291 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 LAMP3Q9UQV4 416 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 VPS13CQ709C8 3753 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 SPG11Q96JI7 2443 aa12.19□□□□□ -0.46
SFSWAP-210ENST00000541286 C3orf85A0A1B0GTC6 90 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 PDCD6O75340 191 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 ECI1P42126 302 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 EWSR1Q01844 656 aaKnown RBP eCLIP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 FOXF2Q12947 444 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 LHFPL2Q6ZUX7 228 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 TUSC5Q8IXB3 177 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 C1orf87Q8N0U7 546 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 OR56B2PQ8NGI1 322 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 RDH5Q92781 318 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 TRIB1Q96RU8 372 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 GINS3Q9BRX5 216 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 ZDHHC11Q9H8X9 412 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 K7N7A8 449 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 IDH3GP51553 393 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 HLA-DRB3P79483 266 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 ADIRFQ15847 76 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 TBC1D26Q86UD7 250 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 RBM7Q9Y580 266 aaKnown RBP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 C5orf49A4QMS7 147 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 BCL3P20749 454 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 OTX1P32242 354 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 GNG10P50151 68 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 PAX5Q02548 391 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 JOSD1Q15040 202 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 GAPTQ8N292 157 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 OR2C3Q8N628 320 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 CCDC71LQ8N9Z2 235 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 WDYHV1Q96HA8 205 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 ADGRG7Q96K78 797 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 TMEM208Q9BTX3 173 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 RIMS4Q9H426 269 aaPredicted RBP12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 GOLT1BQ9Y3E0 138 aa12.18□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF705FA8MVS1 300 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 MPPED1O15442 326 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 IGLV3-1P01715 115 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF705DP0CH99 300 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF705BP0CI00 300 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 LMO1P25800 156 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 RAC3P60763 192 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 RELQ04864 619 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 OR2V1Q8NHB1 315 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 MSI2Q96DH6 328 aaKnown RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 OR2H1Q9GZK4 316 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 WNT5BQ9H1J7 359 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF665Q9H7R5 613 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 CELSR2Q9HCU4 2923 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 A0A1W2PPQ1 181 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 IGSF23A1L1A6 192 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 TK1P04183 234 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 BMP5P22003 454 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 CRYGSP22914 178 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 ELLP55199 621 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 GNB2P62879 340 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 RPP30P78346 268 aaKnown RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF154Q13106 437 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 MRPL49Q13405 166 aaKnown RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 CST9LP1Q5W188 147 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 IGFL3Q6UXB1 125 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 CMTM1Q8IZ96 169 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 OR10J5Q8NHC4 309 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 PRRG4Q9BZD6 226 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 OPN3Q9H1Y3 402 aaPredicted RBP12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 TENM4Q6N022 2769 aa12.17□□□□□ -0.46
SFSWAP-210ENST00000541286 TDRG1Q3Y452 100 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 GPR157Q5UAW9 335 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 PRORYQ9H606 182 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 CCL28Q9NRJ3 127 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 ELOA3CA0A087WX78 387 aaPredicted RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 LOC102725191A0A1B0GVB3 256 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 FKBP2P26885 142 aaKnown RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 FUT6P51993 359 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 Q6ZPA2 131 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 CRIM1Q9NZV1 1036 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 FUT9Q9Y231 359 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 PLCE1Q9P212 2302 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 MRPL33O75394 65 aaKnown RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 DTYMKP23919 212 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 DYNLT3P51808 116 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 RBM11P57052 281 aaKnown RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 NUFIP2Q7Z417 695 aaKnown RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 CPEB3Q8NE35 698 aaKnown RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 VSIRQ9H7M9 311 aa12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 HRNRQ86YZ3 2850 aaPredicted RBP12.16□□□□□ -0.46
SFSWAP-210ENST00000541286 ZNF816-ZNF321PA0A0X1KG74 233 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms