RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 COMMD3Q9UBI1 195 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 KCNK7Q9Y2U2 307 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 RNF114Q9Y508 228 aa12.07□□□□□ -0.48
CPSF1-208ENST00000532560 HAX1O00165 279 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 MFNGO00587 321 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 HSD17B6O14756 317 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 TIMM23O14925 209 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 SLC31A2O15432 143 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 SNRPBP14678 240 aaKnown RBP12.06□□□□□ -0.48
CPSF1-208ENST00000532560 HIST1H1DP16402 221 aaKnown RBP12.06□□□□□ -0.48
CPSF1-208ENST00000532560 HLA-DMAP28067 261 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF137PP52743 207 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 HLA-DRB3P79483 266 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 HABP2Q14520 560 aaPredicted RBP12.06□□□□□ -0.48
CPSF1-208ENST00000532560 GNMTQ14749 295 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 MORN2Q502X0 79 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 C16orf82Q7Z2V1 217 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 Q8N402 240 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 DTX3Q8N9I9 347 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 DUSP18Q8NEJ0 188 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 ST6GALNAC6Q969X2 333 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 Q9N2K0 584 aa12.06□□□□□ -0.48
CPSF1-208ENST00000532560 FAM90A9PA6NNJ1 464 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 SERPINE3A8MV23 424 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 YPEL1O60688 119 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 SCGNO76038 276 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 RGS11O94810 467 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 CD3GP09693 182 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 PPP1CCP36873 323 aaKnown RBP12.05□□□□□ -0.48
CPSF1-208ENST00000532560 KIR2DS4P43632 304 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 INPP1P49441 399 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF134P52741 427 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 PROK1P58294 105 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 MRPS15P82914 257 aaKnown RBP12.05□□□□□ -0.48
CPSF1-208ENST00000532560 DIAPH2-AS1Q14236 149 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 ARL6IP1Q15041 203 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 CT45A1Q5HYN5 189 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 C5orf24Q7Z6I8 188 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 THNSL2Q86YJ6 484 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 Q8N2B8 174 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 OR52L2PQ8NGH6 319 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 OR6F1Q8NGZ6 308 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 OR56B4Q8NH76 319 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 CT45A3Q8NHU0 189 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 CFHR4Q92496 578 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 AKR1E2Q96JD6 320 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 YPEL2Q96QA6 119 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 ABHD14AQ9BUJ0 271 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 ETV7Q9Y603 341 aa12.05□□□□□ -0.48
CPSF1-208ENST00000532560 IGHV1-3A0A0C4DH29 117 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 TXNL1O43396 289 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 HPGDSO60760 199 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 OR2F2O95006 317 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 GAPDHP04406 335 aaKnown RBP12.04□□□□□ -0.48
CPSF1-208ENST00000532560 GNB3P16520 340 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 CD24P25063 80 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 RAB25P57735 213 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 CD300CQ08708 224 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 IL18Q14116 193 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 FBLN7Q53RD9 439 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 C11orf88Q6PI97 169 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 PLET1Q6UQ28 207 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 DRAM1Q8N682 238 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 OR2T6Q8NHC8 308 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 RTN4IP1Q8WWV3 396 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-208ENST00000532560 IL1F10Q8WWZ1 152 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 SLC25A33Q9BSK2 321 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 C11orf54Q9H0W9 315 aaPredicted RBP12.04□□□□□ -0.48
CPSF1-208ENST00000532560 ATG5Q9H1Y0 275 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF702PQ9H963 129 aa12.04□□□□□ -0.48
CPSF1-208ENST00000532560 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.04□□□□□ -0.48
CPSF1-208ENST00000532560 FAM25AB3EWG3 89 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 FAM25CB3EWG5 89 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 FAM25GB3EWG6 89 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 RGS13O14921 159 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 SNRNP70P08621 437 aaKnown RBP12.03□□□□□ -0.48
CPSF1-208ENST00000532560 FCGR3AP08637 254 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 FAM106CPP0CH98 169 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 PITPNAQ00169 270 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 IDNKQ5T6J7 187 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 PYHIN1Q6K0P9 492 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 IZUMO1Q8IYV9 350 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 OR2AK2Q8NG84 335 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 CAPSLQ8WWF8 208 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 ZNF486Q96H40 463 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-208ENST00000532560 RBM14Q96PK6 669 aaKnown RBP12.03□□□□□ -0.48
CPSF1-208ENST00000532560 NBEAL1Q6ZS30 2694 aa12.03□□□□□ -0.48
CPSF1-208ENST00000532560 TRDCB7Z8K6 153 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 M0QZK8 103 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 ITGB1BP1O14713 200 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 PLA2G10O15496 165 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 LYRM1O43325 122 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 LANCL1O43813 399 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 LPLP06858 475 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 REG1BP48304 166 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 ZFP69Q49AA0 526 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 TGIF2LXQ8IUE1 241 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 LYG1Q8N1E2 194 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 SLC25A38Q96DW6 304 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 CITED1Q99966 193 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms