RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MED21Q13503 144 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 PAFAH1B3Q15102 231 aaKnown RBP2.37□□□□□ -2.03
CD44-223ENST00000526553 CLEC12BQ2HXU8 276 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 NXNL2Q5VZ03 156 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 SPINT4Q6UDR6 99 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 PLCZ1Q86YW0 608 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 ZIC4Q8N9L1 334 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 OR5L1Q8NGL2 311 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 CLDN23Q96B33 292 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 RMI2Q96E14 147 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 ARL5BQ96KC2 179 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 TMEM56Q96MV1 263 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 FAM210AQ96ND0 272 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 EBPLQ9BY08 206 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 SPANXB1Q9NS25 103 aaPredicted RBP2.37□□□□□ -2.03
CD44-223ENST00000526553 TMEM38BQ9NVV0 291 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 DOCK2Q92608 1830 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 DNAH12Q6ZR08 3092 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 GPR179Q6PRD1 2367 aa2.37□□□□□ -2.03
CD44-223ENST00000526553 PLXNB2O15031 1838 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 PHIPQ8WWQ0 1821 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 MUC6Q6W4X9 2439 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 A8MUU9 505 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 FTCDNL1E5RQL4 147 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 TMEM250H0YL14 139 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 GPR171O14626 319 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 KCNK2O95069 426 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 HLA-AP01891 365 aaKnown RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 CNTFRP26992 372 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 EMP2P54851 167 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 DNLZQ5SXM8 178 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 TTC33Q6PID6 262 aaPredicted RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 OLIG3Q7RTU3 272 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 DAZ4Q86SG3 579 aaKnown RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 MUC15Q8N387 334 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 OR2M3Q8NG83 312 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 OR52E4Q8NGH9 312 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 OR4P4Q8NGL7 312 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 SUN5Q8TC36 379 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 DDI1Q8WTU0 396 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 ITLN2Q8WWU7 325 aaPredicted RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 SMIM12Q96EX1 92 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 LINC01587Q99440 93 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 UPF3BQ9BZI7 483 aaKnown RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 PARVGQ9HBI0 331 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 DAZ1Q9NQZ3 744 aaKnown RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 IMP3Q9NV31 184 aaKnown RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 DMAC2Q9NW81 257 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 POMPQ9Y244 141 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 ZNF706Q9Y5V0 76 aaPredicted RBP2.36□□□□□ -2.03
CD44-223ENST00000526553 DOCK1Q14185 1865 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 DYSFO75923 2080 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 MAST2Q6P0Q8 1798 aa2.36□□□□□ -2.03
CD44-223ENST00000526553 LTBP2Q14767 1821 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 SPTBN5Q9NRC6 3674 aaKnown RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 BDP1A6H8Y1 2624 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 LEUTXA8MZ59 168 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 IGLL5B9A064 214 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 KLRC4-KLRK1H3BQV0 150 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 K7ERS5 55 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 FGF16O43320 207 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 SOX14O95416 240 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 GTF2F2P13984 249 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 HIST1H1CP16403 213 aaKnown RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 HSPA13P48723 471 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 FKBP1AP62942 108 aaKnown RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 ENDOGQ14249 297 aaKnown RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 LRRC26Q2I0M4 334 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 PRR9Q5T870 116 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 FAM151BQ6UXP7 276 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 DPPA2Q7Z7J5 298 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 FUNDC1Q8IVP5 155 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 GATD1Q8NB37 220 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 STOML3Q8TAV4 291 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 C2orf15Q8WU43 125 aaKnown RBP2.35□□□□□ -2.03
CD44-223ENST00000526553 PYURFQ96I23 114 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 ULBP1Q9BZM6 244 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 DRC3Q9H069 523 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 OR51E2Q9H255 320 aa2.35□□□□□ -2.03
CD44-223ENST00000526553 SVILO95425 2214 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 IGHV3-21A0A0B4J1V1 117 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 IGHV3-43A0A0B4J1X8 118 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 OR6C70A6NIJ9 312 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 C16orf90A8MZG2 172 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 POP7O75817 140 aaKnown RBP2.34□□□□□ -2.03
CD44-223ENST00000526553 ACTR1BP42025 376 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 RPL14P50914 215 aaKnown RBP2.34□□□□□ -2.03
CD44-223ENST00000526553 GTF2BQ00403 316 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 BIKQ13323 160 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 TMEM241Q24JQ0 296 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 TBPL2Q6SJ96 375 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 SPNS3Q6ZMD2 512 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 CLEC20AQ6ZU45 233 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 AMN1Q8IY45 258 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 ZFP62Q8NB50 900 aaPredicted RBP2.34□□□□□ -2.03
CD44-223ENST00000526553 OR8S1Q8NH09 359 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 RBP7Q96R05 134 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 PRSS27Q9BQR3 290 aa2.34□□□□□ -2.03
CD44-223ENST00000526553 ZNF436Q9C0F3 470 aaPredicted RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms