RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 C6orf52Q5T4I8 152 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ATP1A1-AS1Q5TC04 95 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 Q5XG85 94 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LEG1Q6P5S2 330 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TRIM40Q6P9F5 258 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 RASL11AQ6T310 242 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 REG3GQ6UW15 175 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 Q6ZRG5 221 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LINC00299Q6ZSB3 139 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 HSD11B1LQ7Z5J1 315 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZNF429Q86V71 674 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GKN2Q86XP6 184 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TGIF2LYQ8IUE0 185 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SLC22A18ASQ8N1D0 253 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GPD1LQ8N335 351 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 YIPF7Q8N8F6 280 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 C15orf54Q8N8G6 183 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZNF740Q8NDX6 193 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 KLHL30-AS1Q8NEE0 82 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 BPIFB6Q8NFQ5 453 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 OR2T33Q8NG76 320 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 OR4K5Q8NGD3 323 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MCFD2Q8NI22 146 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 JOSD2Q8TAC2 188 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PIFOQ8TCI5 191 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SSC4DQ8WTU2 575 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 THEM6Q8WUY1 208 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MBD3L1Q8WWY6 194 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LCN9Q8WX39 176 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ARPC1AQ92747 370 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MRPL24Q96A35 216 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 TMEM159Q96B96 161 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 RCN3Q96D15 328 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 RDH12Q96NR8 316 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GPER1Q99527 375 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 NIPSNAP3BQ9BS92 247 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PSMG3Q9BT73 122 aaPredicted RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 SLC17A9Q9BYT1 436 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZDHHC11Q9H8X9 412 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 EDA2RQ9HAV5 297 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TAF9BQ9HBM6 251 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 KCNJ16Q9NPI9 418 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GPR84Q9NQS5 396 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SPANXA1Q9NS26 97 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CA10Q9NS85 328 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ARMCX1Q9P291 453 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PCYOX1Q9UHG3 505 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CES1P1Q9UKY3 287 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 INSIG2Q9Y5U4 225 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PLCH2O75038 1416 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PIK3C2GO75747 1445 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SCAF11Q99590 1463 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 FYCO1Q9BQS8 1478 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ADAMTS12P58397 1594 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 A0A087WZ39 114 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 FAM240AA0A1B0GVK7 77 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 TMEM269A0A1B0GVZ9 245 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 DUXBA0A1W2PPF3 345 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 DHRS12A0PJE2 317 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 OR5H15A6NDH6 313 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 OR5B21A6NL26 309 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 IFITM5A6NNB3 132 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 ZNF724A8MTY0 619 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 D6RAR5 112 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 E7EQ34 232 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.79□□□□□ -2.12
CD44-216ENST00000525293 H7BYZ3 331 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.79□□□□□ -2.12
CD44-216ENST00000525293 TRAF3IP2O43734 574 aaPredicted RBP1.79□□□□□ -2.12
CD44-216ENST00000525293 RAMP1O60894 148 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 NPIPB7O75200 414 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 AIFM1O95831 613 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 MT-ND4LP03901 98 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 CD14P08571 375 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 SMIM17P0DL12 118 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 OR12D1P0DN82 309 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 BCKDHAP12694 445 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 ZNF19P17023 458 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 MYL12AP19105 171 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 MYL9P24844 172 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 TSPOP30536 169 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 GPR183P32249 361 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 GABRA3P34903 492 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 KIR2DS2P43631 304 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 APOC4P55056 127 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 NDUFA6P56556 154 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 OR12D2P58182 307 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 NCS1P62166 190 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 HIST1H3AP68431 136 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 SRPXP78539 464 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 H3F3AP84243 136 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 MEF2BQ02080 365 aaPredicted RBP1.79□□□□□ -2.12
CD44-216ENST00000525293 PRDX4Q13162 271 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 PMAIP1Q13794 54 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 PDGFRLQ15198 375 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 ZNF726P1Q15940 193 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 SSX1Q16384 188 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 IAH1Q2TAA2 248 aaPredicted RBP1.79□□□□□ -2.12
CD44-216ENST00000525293 SLC25A35Q3KQZ1 300 aa1.79□□□□□ -2.12
CD44-216ENST00000525293 TDRG1Q3Y452 100 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms