RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 IQCF6A8MYZ5 107 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 C16orf97H3BN30 126 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 TRIM77I1YAP6 450 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 J3QW42 95 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 RAB31Q13636 194 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 H1FOOQ8IZA3 346 aaPredicted RBP8.59□□□□□ -1.03
MCF2-209ENST00000520602 SLC35B3Q9H1N7 401 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 LYRM2Q9NU23 88 aaPredicted RBP8.59□□□□□ -1.03
MCF2-209ENST00000520602 CACFD1Q9UGQ2 172 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 LAMP3Q9UQV4 416 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 WSB1Q9Y6I7 421 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 FOXI3A8MTJ6 420 aaPredicted RBP8.59□□□□□ -1.04
MCF2-209ENST00000520602 SOX15O60248 233 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 HERPUD1Q15011 391 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 ABHD17AQ96GS6 310 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 CCL13Q99616 98 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 ASCL3Q9NQ33 180 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 CLCF1Q9UBD9 225 aa8.59□□□□□ -1.04
MCF2-209ENST00000520602 DUXBA0A1W2PPF3 345 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 PSPNO60542 156 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 CLDN14O95500 239 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 ARG1P05089 322 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 TNFRSF1AP19438 455 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 RBMS3Q6XE24 437 aaKnown RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 ACP7Q6ZNF0 438 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 LRP11Q86VZ4 500 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 R3HDM4Q96D70 268 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 RNF7Q9UBF6 113 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 A0A0U1RQK1 487 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 RBFOX3A6NFN3 312 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 C17orf112F2Z3M2 114 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 OR2C1O95371 312 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 COMMD1Q8N668 190 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 RPUSD4Q96CM3 377 aaKnown RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 CIB3Q96Q77 187 aaPredicted RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 BIN3Q9NQY0 253 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 ODAMA1E959 279 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 FAM90A27PA6NNH2 459 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 PITX3O75364 302 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 PTBP3O95758 552 aaKnown RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 ADIRFQ15847 76 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 EIF2S3LQ2VIR3 472 aaKnown RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 OR13A1Q8NGR1 328 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 DTD1Q8TEA8 209 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 FGF23Q9GZV9 251 aaPredicted RBP8.58□□□□□ -1.04
MCF2-209ENST00000520602 SLC25A22Q9H936 323 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 OR6C3Q9NZP0 311 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 RFNGQ9Y644 331 aa8.58□□□□□ -1.04
MCF2-209ENST00000520602 IGKV1-6A0A0C4DH72 117 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 AWAT1Q58HT5 328 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 LDLRAD3Q86YD5 345 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 FAM24BQ8N5W8 94 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 STARD4Q96DR4 205 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 WFDC1Q9HC57 220 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 CEP295Q9C0D2 2601 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 IGHV1-18A0A0C4DH31 117 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 MGST3O14880 152 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 S1PR2O95136 353 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 CYB5R3P00387 301 aaPredicted RBP8.57□□□□□ -1.04
MCF2-209ENST00000520602 GYPAP02724 150 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 PSMB3P49720 205 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 C1orf87Q8N0U7 546 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 PINX1Q96BK5 328 aaKnown RBP8.57□□□□□ -1.04
MCF2-209ENST00000520602 TMEM56Q96MV1 263 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 OR5B12Q96R08 314 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 GCM1Q9NP62 436 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 TMEM56-RWDD3S4R434 201 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 DOCK11Q5JSL3 2073 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 ZNF727A8MUV8 499 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 IGHG3P01860 377 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 DANCRP0C864 163 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 KRTCAP3Q53RY4 240 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 ZNF324BQ6AW86 544 aaPredicted RBP8.57□□□□□ -1.04
MCF2-209ENST00000520602 WDR82Q6UXN9 313 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 RPRMLQ8N4K4 120 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 OR10X1Q8NGY0 326 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 RARRES2Q99969 163 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 MMP24Q9Y5R2 645 aa8.57□□□□□ -1.04
MCF2-209ENST00000520602 C7orf77A4D0Y5 90 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 MAP1LC3B2A6NCE7 125 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 S100A2P29034 98 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 RND3P61587 244 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 MRPS11P82912 194 aaKnown RBP8.56□□□□□ -1.04
MCF2-209ENST00000520602 CLEC12BQ2HXU8 276 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 TIMM23BQ5SRD1 257 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 CRIP3Q6Q6R5 217 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 ZNF497Q6ZNH5 498 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 ZNF429Q86V71 674 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 ZCCHC24Q8N2G6 241 aaKnown RBP8.56□□□□□ -1.04
MCF2-209ENST00000520602 ZNF645Q8N7E2 425 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 C1orf162Q8NEQ5 155 aaPredicted RBP8.56□□□□□ -1.04
MCF2-209ENST00000520602 ABHD14AQ9BUJ0 271 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 MAP1LC3BQ9GZQ8 125 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 CYB5BO43169 146 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 ADH4P08319 380 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 COX5AP20674 150 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 CD200P41217 278 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 UBE2G2P60604 165 aa8.56□□□□□ -1.04
MCF2-209ENST00000520602 FFAR4Q5NUL3 377 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms