RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TAF9BQ9HBM6 251 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 CDH20Q9HBT6 801 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 ZNF160Q9HCG1 818 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 KCNJ16Q9NPI9 418 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 TMEM160Q9NX00 188 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 ZNF586Q9NXT0 402 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 ZNF226Q9NYT6 803 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 SLC2A6Q9UGQ3 507 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 SEC16AO15027 2179 aa4.62□□□□□ -1.67
NUP54-218ENST00000515460 IGLV3-12A0A075B6K2 115 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TRAV14DV4A0A0A6YYC5 116 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 A0A1W2PPV9 198 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ARRDC5A6NEK1 342 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 UMAD1C9J7I0 102 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TAAR5O14804 337 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 SIVA1O15304 175 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 PLPP2O43688 288 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 FGF17O60258 216 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 RCBTB2O95199 551 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 FAM157CP0CG43 387 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 PGA3P0DJD8 388 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 COX6A1P12074 109 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 AZU1P20160 251 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 PRKACGP22612 351 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 KDELR2P33947 212 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TFPI2P48307 235 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 SULT1A2P50226 295 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 HNRNPA3P51991 378 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 RND2P52198 227 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 POLR2JP52435 117 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 DIO3P55073 304 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ATP5J2P56134 94 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 UBE2NP61088 152 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 RPS25P62851 125 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 SRPXP78539 464 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 MRPS34P82930 218 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 RUNX1Q01196 453 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ACVR1Q04771 509 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 DHRS2Q13268 280 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 MELKQ14680 651 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TMEM41BQ5BJD5 291 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ALG10Q5BKT4 473 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 FAM78BQ5VT40 261 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 PODNL1Q6PEZ8 512 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 C16orf47Q6ZP98 133 aaPredicted RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 OLIG3Q7RTU3 272 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 BEST3Q8N1M1 668 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 STPG4Q8N801 248 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 FER1L6-AS1Q8NA97 138 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 OR51A2Q8NGJ7 313 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 OR2A1Q8NGT9 310 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 OR4L1Q8NH43 312 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 HAVCR2Q8TDQ0 301 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 UBTD2Q8WUN7 234 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 FRZBQ92765 325 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TSLPQ969D9 159 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 GALMQ96C23 342 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 BTF3L4Q96K17 158 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ZNF75AQ96N20 296 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TSPAN32Q96QS1 320 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 OR11A1Q9GZK7 315 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 SLC35B3Q9H1N7 401 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TXNIPQ9H3M7 391 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 TMEM231Q9H6L2 316 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ALG9Q9H6U8 611 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 SRD5A3Q9H8P0 318 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 MED20Q9H944 212 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 PATZ1Q9HBE1 687 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 A4GALTQ9NPC4 353 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 SLC7A10Q9NS82 523 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 ABRACLQ9P1F3 81 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 NXT1Q9UKK6 140 aaKnown RBP4.61□□□□□ -1.67
NUP54-218ENST00000515460 TRAPPC2LQ9UL33 140 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 B3GALT5Q9Y2C3 310 aa4.61□□□□□ -1.67
NUP54-218ENST00000515460 IGHV1-45A0A0A0MS14 117 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 NSG1A0A0A6YYJ2 146 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TRAV17A0A0B4J275 112 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TRGV8A0A0C4DH27 118 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ZNF705FA8MVS1 300 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 E5RGE8 158 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 CCL21O00585 134 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 C1orf105O95561 183 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 CDS2O95674 445 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 PMS2P2O95744 297 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TMEM50AO95807 157 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 MT-ND4P03905 459 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 TRGC2P03986 189 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GBAP04062 536 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 SERPINA7P05543 415 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 IL3P08700 152 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 ZNF705DP0CH99 300 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 ZNF705BP0CI00 300 aaPredicted RBP4.6□□□□□ -1.67
NUP54-218ENST00000515460 MPC1LP0DKB6 136 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 OR12D1P0DN82 309 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 EPORP19235 508 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 FUT1P19526 365 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 HTR1FP30939 366 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 GABRA3P34903 492 aa4.6□□□□□ -1.67
NUP54-218ENST00000515460 MDH2P40926 338 aaKnown RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms