RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NFAM1Q8NET5 270 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 SGMS2Q8NHU3 365 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 FGF11Q92914 225 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 RSPO3Q9BXY4 272 aaPredicted RBP14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 HRASP01112 189 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 CD5P06127 495 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 MRGPRFQ96AM1 343 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 TUBD1Q9UJT1 453 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 RNF24Q9Y225 148 aa14.06□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BKO60814 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BJP06899 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BOP23527 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BBP33778 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BDP58876 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BCP62807 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST2H2BEQ16778 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 TMEM183AQ8IXX5 376 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BHQ93079 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BNQ99877 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HIST1H2BMQ99879 126 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HSPB9Q9BQS6 159 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 DIDO1Q9BTC0 2240 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 GNG10P50151 68 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 MEF2BQ02080 365 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 CISD2Q8N5K1 135 aaKnown RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 RTBDNQ9BSG5 229 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 ZNF355PQ9NSJ1 428 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 PKDREJQ9NTG1 2253 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 CACNA1BQ00975 2339 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 TIMP4Q99727 224 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 OPN3Q9H1Y3 402 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 MANBALQ9NQG1 85 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 WNK2Q9Y3S1 2297 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 HOXA6P31267 233 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 GFI1BQ5VTD9 330 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 TPPP3Q9BW30 176 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 OR2D2Q9H210 308 aa14.05□□□□□ -0.16
CCDC88B-209ENST00000494080 MRPL14Q6P1L8 145 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 RBMXL3Q8N7X1 1067 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 TMEM147Q9BVK8 224 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 CYTL1Q9NRR1 136 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 TRGV10A0A0A0MS01 117 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 SCGB2A1O75556 95 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 SRP19P09132 144 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 TCL1AP56279 114 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 OR5A2Q8NGI9 324 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 ACY3Q96HD9 319 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 GINS3Q9BRX5 216 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 CELA3AP09093 270 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 KLF3P57682 345 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 MOB1BQ7L9L4 216 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 GALNT14Q96FL9 552 aa14.04□□□□□ -0.16
CCDC88B-209ENST00000494080 A0A0G2JMM0 328 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 A0A1W2PPB8 328 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 A0A1W2PRS3 328 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 KIR3DP1A8MWS1 328 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 FCGR3BO75015 233 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 CCL17Q92583 94 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 LOXL4Q96JB6 756 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 IGLV3-12A0A075B6K2 115 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 J3QT63 122 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 UMODP07911 640 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 LGALS4P56470 323 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 FNDC7Q5VTL7 733 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 RNASEKQ6P5S7 137 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 HEPN1Q6WQI6 88 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 CPEB3Q8NE35 698 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 MISP3Q96FF7 219 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 SIGLEC12Q96PQ1 595 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 GLRX2Q9NS18 164 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 PRR19A6NJB7 356 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 IER3P46695 156 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 HLA-DRB5Q30154 266 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 LYG1Q8N1E2 194 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 ZNF837Q96EG3 531 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 IMMP1LQ96LU5 166 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 NDUFAF3Q9BU61 184 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 TMEM222Q9H0R3 208 aa14.03□□□□□ -0.16
CCDC88B-209ENST00000494080 CNIH1O95406 144 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 IL3RAP26951 378 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 UBE2G1P62253 170 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 TMEM211Q6ICI0 200 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 SSUH2Q9Y2M2 353 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 PHF3Q92576 2039 aaKnown RBP14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 CTXND1A0A1B0GTU2 59 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 DIRC3C9JPN6 131 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 IGHMP01871 453 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 TNFRSF1AP19438 455 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 RBM11P57052 281 aaKnown RBP14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 FAM131CQ96AQ9 280 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 GMPPAQ96IJ6 420 aaPredicted RBP14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 COMMD5Q9GZQ3 224 aa14.02□□□□□ -0.16
CCDC88B-209ENST00000494080 SNURFLB1AK76 121 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 ZIC3O60481 467 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 OR10J4P0C629 311 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 TMEM187Q14656 261 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 ABLIM2Q6H8Q1 611 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 GTF3AQ92664 365 aaKnown RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms