RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SNAPC3Q92966 411 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 CYYR1Q96J86 154 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 CLCC1Q96S66 551 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 EBF4Q9BQW3 602 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 YIPF3Q9GZM5 350 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 INTS9Q9NV88 658 aaKnown RBP3.4□□□□□ -1.87
USP4-209ENST00000475873 NDUFAF4Q9P032 175 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 NUFIP1Q9UHK0 495 aaKnown RBP3.4□□□□□ -1.87
USP4-209ENST00000475873 ENPP4Q9Y6X5 453 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 X6R8D5 127 aa3.4□□□□□ -1.87
USP4-209ENST00000475873 TMEM269A0A1B0GVZ9 245 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 MPTX1A8MV57 137 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 SDCBPO00560 298 aaPredicted RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 TGOLN2O43493 480 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 GAS8-AS1O95177 125 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 OR2C1O95371 312 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 CA2P00918 260 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 HMGN1P05114 100 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 H1F0P07305 194 aaKnown RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 SCTP09683 121 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 STAG3L3P0CL85 134 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 MT1HL1P0DM35 61 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 ZNF20P17024 532 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 ALOX5APP20292 161 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 C21orf33P30042 268 aaPredicted RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 GSTT1P30711 240 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 IFNA8P32881 189 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 PPP5CP53041 499 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 SCAND1P57086 179 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 KRTAP10-4P60372 401 aaPredicted RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 PAX5Q02548 391 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 LIPEQ05469 1076 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 PJVKQ0ZLH3 352 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 EXOSC2Q13868 293 aaKnown RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 ICAM4Q14773 271 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 FAM122CQ6P4D5 195 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 DEGS2Q6QHC5 323 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 EPGNQ6UW88 154 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 ZNF562Q6V9R5 426 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 Q8IYB0 196 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 C17orf53Q8N3J3 647 aaPredicted RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 TCEANCQ8N8B7 351 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 ZBTB34Q8NCN2 500 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 OR52M1Q8NGK5 317 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 THEM6Q8WUY1 208 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 RFT1Q96AA3 541 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 GALNT14Q96FL9 552 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 NSMCE2Q96MF7 247 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 C7orf26Q96N11 449 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 CCDC28BQ9BUN5 200 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 YTHDF1Q9BYJ9 559 aaKnown RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 TTTY10Q9BZA0 68 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 TREM1Q9NP99 234 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 NDUFA13Q9P0J0 144 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 RNF150Q9ULK6 438 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 ERGIC3Q9Y282 383 aa3.39□□□□□ -1.87
USP4-209ENST00000475873 RPL36Q9Y3U8 105 aaKnown RBP3.39□□□□□ -1.87
USP4-209ENST00000475873 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 NOTOA8MTQ0 251 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 A8MWP6 167 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 FAM90A23PA8MXZ1 464 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 H0YJX3 145 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 MAGEB4O15481 346 aaPredicted RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 PRODHO43272 600 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 RBBP9O75884 186 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 KDM4BO94953 1096 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 CRYZL1O95825 349 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 CA1P00915 261 aaPredicted RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 PRH1P02810 166 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 GSTT2P0CG29 244 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 GSTT2BP0CG30 244 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 C8orf88P0DMB2 117 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 APELAP0DMC3 54 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 CCL1P22362 96 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 AADACP22760 399 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 RRM2P31350 389 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 ADMP35318 185 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 FUT6P51993 359 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 STX1BP61266 288 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 RPS16P62249 146 aaKnown RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 DLK1P80370 383 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 PDZK1IP1Q13113 114 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 GNMTQ14749 295 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 ANKRD55Q3KP44 614 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 IFI44LQ53G44 452 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 FAM131AQ6UXB0 335 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 UNQ9165/PRO28630Q6UXU0 137 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 PLEKHG7Q6ZR37 379 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 SHFQ7M4L6 423 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 CHST4Q8NCG5 386 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 ADAD2Q8NCV1 583 aaKnown RBP3.38□□□□□ -1.87
USP4-209ENST00000475873 DNAAF1Q8NEP3 725 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 SLC24A4Q8NFF2 622 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 OR10V1Q8NGI7 309 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 OR13C5Q8NGS8 318 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 TMEM163Q8TC26 289 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 THRSPQ92748 146 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 FAM46BQ96A09 425 aa3.38□□□□□ -1.87
USP4-209ENST00000475873 HSH2DQ96JZ2 352 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms