RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GUK1Q16774 197 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 OR10Z1Q8NGY1 313 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 RAXQ9Y2V3 346 aa11.57□□□□□ -0.56
CCDC88A-211ENST00000471947 ADAMTS20P59510 1910 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 WDR82Q6UXN9 313 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 NECAP1Q8NC96 275 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 PLEKHA2Q9HB19 425 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 UMAD1C9J7I0 102 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 CCL20P78556 96 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 ZNF345Q14585 488 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 MSMPQ1L6U9 139 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 ZNF709Q8N972 641 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 OR4A4PQ8NGN8 299 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 CLCC1Q96S66 551 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 WIPI2Q9Y4P8 454 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 FOXI3A8MTJ6 420 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 TMEM50AO95807 157 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 RPL30P62888 115 aaKnown RBP11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 IL24Q13007 206 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 AUP1Q9Y679 476 aa11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 USP9XQ93008 2570 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-211ENST00000471947 RRP8O43159 456 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 SS18L1O75177 396 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 MYOD1P15172 320 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 DHODHQ02127 395 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 CATR1Q13166 79 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 PEA15Q15121 130 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 SOHLH1Q5JUK2 328 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 MRPL37Q9BZE1 423 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 AHRRA9YTQ3 701 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 C9JQL5 133 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 SYNGR2O43760 224 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 C1orf185Q5T7R7 199 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 RBMXL3Q8N7X1 1067 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 IGFBPL1Q8WX77 278 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 MYOZ1Q9NP98 299 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 GLRX2Q9NS18 164 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 LRBAP50851 2863 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 IGHV3-21A0A0B4J1V1 117 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 ZG16O60844 167 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 CRYABP02511 175 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 FGF2P09038 288 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 SMUG1Q53HV7 270 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 OR4A16Q8NH70 328 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 PINX1Q96BK5 328 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 RPUSD4Q96CM3 377 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 AQP10Q96PS8 301 aa11.55□□□□□ -0.56
CCDC88A-211ENST00000471947 NAPSAO96009 420 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 COX5BP10606 129 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 PDZD11Q5EBL8 140 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 UTF1Q5T230 341 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 CST9LP1Q5W188 147 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 FAM122CQ6P4D5 195 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 SPACA3Q8IXA5 215 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 PPP1R35Q8TAP8 253 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 DKK4Q9UBT3 224 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 PKD1L2Q7Z442 2459 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 TNFSF13O75888 250 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 TNFSF4P23510 183 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 ZNF266Q14584 549 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 ACP7Q6ZNF0 438 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 LDLRAD3Q86YD5 345 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 PRELID1Q9Y255 219 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 TANC2Q9HCD6 1990 aa11.54□□□□□ -0.56
CCDC88A-211ENST00000471947 ZNF727A8MUV8 499 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 AQP7O14520 342 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 ACTL6BO94805 426 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 HOXD4P09016 255 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 CD82P27701 267 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 HOXA1P49639 335 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 SRPXP78539 464 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 AVPI1Q5T686 147 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 HSD17B13Q7Z5P4 300 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 TMEM171Q8WVE6 324 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 SSMEM1Q8WWF3 244 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 NRIP2Q9BQI9 281 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 NUDT16L1Q9BRJ7 211 aaKnown RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 POMT1Q9Y6A1 747 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 WSB1Q9Y6I7 421 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 OR4A8P0C604 315 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 PGA5P0DJD9 388 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 F2RL1P55085 397 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 ERVK-16P61578 105 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 LY6DQ14210 128 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 EIF2S3LQ2VIR3 472 aaKnown RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 C4orf17Q53FE4 359 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 PCSK4Q6UW60 755 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 SEM1Q6ZVN7 128 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 LILRB1Q8NHL6 650 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 RSRP1Q9BUV0 290 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 RIMS4Q9H426 269 aaPredicted RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 LIN7CQ9NUP9 197 aaKnown RBP11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 A0A1W2PPE2 198 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 H7C1Q1 480 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 GFRA3O60609 400 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 FAM24BQ8N5W8 94 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 CD177Q8N6Q3 437 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 ZDHHC8Q9ULC8 765 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 FAM215AQ9Y5M1 114 aa11.53□□□□□ -0.56
CCDC88A-211ENST00000471947 C16orf97H3BN30 126 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms