RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RTP5Q14D33 572 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OR52L2PQ8NGH6 319 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 GPR87Q9BY21 358 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 IL36GQ9NZH8 169 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 PILRBQ9UKJ0 227 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 MPC1Q9Y5U8 109 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 ARHGAP21Q5T5U3 1957 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 MT-CO3P00414 261 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 MMP7P09237 267 aaPredicted RBP10.11□□□□□ -0.79
MSH6-204ENST00000445503 GCH1P30793 250 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 ERVK-16P61578 105 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 PNRC1Q12796 327 aaPredicted RBP10.11□□□□□ -0.79
MSH6-204ENST00000445503 TRA2AQ13595 282 aaKnown RBP eCLIP10.11□□□□□ -0.796e-7■■■■■ 32.2
MSH6-204ENST00000445503 C20orf204Q6ZNR8 217 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 KLRC4-KLRK1H3BQV0 150 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 NDUFS6O75380 124 aaKnown RBP10.11□□□□□ -0.79
MSH6-204ENST00000445503 CD55P08174 381 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 DEFA4P12838 97 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 MEOX1P50221 254 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 PMS2P11Q13670 270 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OR4A16Q8NH70 328 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 OR1L1Q8NH94 360 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 PCGF1Q9BSM1 259 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 LRRC3CA6NJW4 275 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 J3QT63 122 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 CYB5R3P00387 301 aaPredicted RBP10.11□□□□□ -0.79
MSH6-204ENST00000445503 TFF1P04155 84 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 FAM78BQ5VT40 261 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 NAT8Q9UHE5 227 aa10.11□□□□□ -0.79
MSH6-204ENST00000445503 SPTA1P02549 2419 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 DUXBA0A1W2PPF3 345 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 C17orf112F2Z3M2 114 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 PPP1CBP62140 327 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TMEM42Q69YG0 159 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 Q6ZRM9 215 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TMEM251Q8N6I4 163 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TAF15Q92804 592 aaKnown RBP eCLIP10.1□□□□□ -0.79
MSH6-204ENST00000445503 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.1□□□□□ -0.79
MSH6-204ENST00000445503 CADP27708 2225 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 POLEQ07864 2286 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 IGKV1-6A0A0C4DH72 117 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 FAM157AC9JC47 383 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TMEM11P17152 192 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 NMSQ5H8A3 153 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 ABHD14BQ96IU4 210 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TTTY12Q9BZ98 90 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 PRR14LQ5THK1 2151 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 B4DEV8 164 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 HOXB1P14653 301 aaPredicted RBP10.1□□□□□ -0.79
MSH6-204ENST00000445503 FAM3BP58499 235 aaPredicted RBP10.1□□□□□ -0.79
MSH6-204ENST00000445503 CYB5R2Q6BCY4 276 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 FOXL2NBQ6ZUU3 175 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 DMRT1Q9Y5R6 373 aa10.1□□□□□ -0.79
MSH6-204ENST00000445503 TRAV24A0A0B4J272 114 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 MDFIC2A0A1B0GVS7 189 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 TMEM30CPA0ZSE6 113 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 SOD3P08294 240 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 B3GALT5-AS1P59052 145 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 DRAM1Q8N682 238 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 DTD1Q8TEA8 209 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 ARRDC1-AS1Q9H2J1 176 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 DECR2Q9NUI1 292 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FCGR3BO75015 233 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 AGFG2O95081 481 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 MEF2BQ02080 365 aaPredicted RBP10.09□□□□□ -0.79
MSH6-204ENST00000445503 Q0VFX4 171 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 CDPF1Q6NVV7 123 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 TRIB1Q96RU8 372 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 TP53TG5Q9Y2B4 290 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 PRRC2CQ9Y520 2896 aaKnown RBP10.09□□□□□ -0.79
MSH6-204ENST00000445503 ELOA3CA0A087WX78 387 aaPredicted RBP10.09□□□□□ -0.79
MSH6-204ENST00000445503 LY6G6EA0A0G2JKS1 128 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A10PA6NDY2 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A18PA6NE21 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A16PA6NEW6 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A20PA6NIJ5 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A8PA6NJQ4 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A7PA6NKC0 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A22PA8MWA6 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A12PA8MX19 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A5PA8MXJ8 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A23PA8MXZ1 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A15PP0C7V4 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A13PP0C7W8 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A14PP0C7W9 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 FAM90A24PP0C7X0 464 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 KDF1Q8NAX2 398 aaPredicted RBP10.09□□□□□ -0.79
MSH6-204ENST00000445503 SLC25A40Q8TBP6 338 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 OR5P3Q8WZ94 311 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 MSL2Q9HCI7 577 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 U3KQA8 63 aa10.09□□□□□ -0.79
MSH6-204ENST00000445503 ST8SIA5O15466 376 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 HAND1O96004 215 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 GPR12P47775 334 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 CTAG1AP78358 180 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ZNF600Q6ZNG1 722 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 NUP210LQ5VU65 1888 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 A0A1B0GV90 55 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 WNT9BO14905 357 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 SPINT2O43291 252 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms