RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 FREM2Q5SZK8 3169 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 TMEM265A0A087WTH1 108 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 GJE1A6NN92 205 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 CBR3O75828 277 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 DEFA4P12838 97 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 CHRNA7P36544 502 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 ACOT6Q3I5F7 207 aaPredicted RBP18.02■□□□□ 0.47
USP48-205ENST00000421625 SAXO1Q8IYX7 474 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 CCDC74BQ96LY2 380 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 ZNF552Q9H707 407 aaPredicted RBP18.02■□□□□ 0.47
USP48-205ENST00000421625 SH2D2AQ9NP31 389 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 OCIAD1Q9NX40 245 aa18.02■□□□□ 0.47
USP48-205ENST00000421625 COLCA1Q6ZS62 124 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 ABHD3Q8WU67 409 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 PARD6GQ9BYG4 376 aaPredicted RBP18.01■□□□□ 0.47
USP48-205ENST00000421625 POLR3KQ9Y2Y1 108 aaPredicted RBP18.01■□□□□ 0.47
USP48-205ENST00000421625 HOXA6P31267 233 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 CCKARP32238 428 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 CNN1P51911 297 aaKnown RBP18.01■□□□□ 0.47
USP48-205ENST00000421625 ANAPC16Q96DE5 110 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 AURKAIP1Q9NWT8 199 aaPredicted RBP18.01■□□□□ 0.47
USP48-205ENST00000421625 FKBP11Q9NYL4 201 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 KCNS2Q9ULS6 477 aa18.01■□□□□ 0.47
USP48-205ENST00000421625 C1QTNF9BB2RNN3 333 aa18■□□□□ 0.47
USP48-205ENST00000421625 CLDN1O95832 211 aa18■□□□□ 0.47
USP48-205ENST00000421625 CISD2Q8N5K1 135 aaKnown RBP18■□□□□ 0.47
USP48-205ENST00000421625 TMEM9BQ9NQ34 198 aa18■□□□□ 0.47
USP48-205ENST00000421625 A0A096LPE4 126 aa18■□□□□ 0.47
USP48-205ENST00000421625 A0A1W2PPZ6 126 aa18■□□□□ 0.47
USP48-205ENST00000421625 PAGE4O60829 102 aa18■□□□□ 0.47
USP48-205ENST00000421625 ERVFC1-1P60608 527 aa18■□□□□ 0.47
USP48-205ENST00000421625 TMEM256Q8N2U0 113 aa18■□□□□ 0.47
USP48-205ENST00000421625 SPEM1Q8N4L4 309 aa18■□□□□ 0.47
USP48-205ENST00000421625 OR10D3Q8NH80 312 aa18■□□□□ 0.47
USP48-205ENST00000421625 IMMP1LQ96LU5 166 aa18■□□□□ 0.47
USP48-205ENST00000421625 CTXND1A0A1B0GTU2 59 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 A0A1B0GWJ7 208 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 TYMSP04818 313 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 UMODP07911 640 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 COX6A1P12074 109 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 RPS16P62249 146 aaKnown RBP17.99■□□□□ 0.47
USP48-205ENST00000421625 PMP22Q01453 160 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 IGFBP7Q16270 282 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 FAM78BQ5VT40 261 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 MRPL21Q7Z2W9 205 aaKnown RBP17.99■□□□□ 0.47
USP48-205ENST00000421625 OR10G9Q8NGN4 311 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 OR10G7Q8NGN6 311 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 RBM7Q9Y580 266 aaKnown RBP17.99■□□□□ 0.47
USP48-205ENST00000421625 FREM1Q5H8C1 2179 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 C5orf49A4QMS7 147 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 M0R143 59 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 DNPH1O43598 174 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 NUPR1O60356 82 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 NPPCP23582 126 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 IL3RAP26951 378 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 SGCZQ96LD1 299 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 RIMS4Q9H426 269 aaPredicted RBP17.99■□□□□ 0.47
USP48-205ENST00000421625 LOC102723996A0A087X1L8 192 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 WDR1O75083 606 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 RFPL3SP0C7P2 107 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 RIPPLY2Q5TAB7 128 aa17.99■□□□□ 0.47
USP48-205ENST00000421625 CACNA1EQ15878 2313 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 EGR1P18146 543 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 SRP14P37108 136 aaKnown RBP17.98■□□□□ 0.47
USP48-205ENST00000421625 WNT5AP41221 380 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 TDGF1P3P51864 188 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 TMEM14EPQ6UXP3 125 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 TIMM9Q9Y5J7 89 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 PI4KAP42356 2102 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 BMP5P22003 454 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 CXCL12P48061 93 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 C1orf194Q5T5A4 169 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 LRP11Q86VZ4 500 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 STRADBQ9C0K7 418 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 FSCN3Q9NQT6 498 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 DLL3Q9NYJ7 618 aa17.98■□□□□ 0.47
USP48-205ENST00000421625 TRBV6-6A0A0A6YYG2 114 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 ZNF25P17030 456 aaPredicted RBP17.97■□□□□ 0.47
USP48-205ENST00000421625 TFF3Q07654 80 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 FFAR4Q5NUL3 377 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 BTNL3Q6UXE8 466 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 RPS19BP1Q86WX3 136 aaKnown RBP17.97■□□□□ 0.47
USP48-205ENST00000421625 PRRG4Q9BZD6 226 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 PIGBOS1A0A0B4J2F0 54 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 LILRA1O75019 489 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 NGFP01138 241 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 SFTPCP11686 197 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 WIPI1Q5MNZ9 446 aaPredicted RBP17.97■□□□□ 0.47
USP48-205ENST00000421625 NEIL1Q96FI4 390 aaPredicted RBP17.97■□□□□ 0.47
USP48-205ENST00000421625 MANBALQ9NQG1 85 aa17.97■□□□□ 0.47
USP48-205ENST00000421625 KIR2DL5BA0A0G2JN68 375 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 KIR2DL5BA0A0G2JPC4 375 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 WNT2P09544 360 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 RPL15P61313 204 aaKnown RBP17.96■□□□□ 0.47
USP48-205ENST00000421625 KIR2DL5AQ8N109 375 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 FGFRL1Q8N441 504 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 OR5P3Q8WZ94 311 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 NAGKQ9UJ70 344 aa17.96■□□□□ 0.47
USP48-205ENST00000421625 TNRC6BQ9UPQ9 1833 aaKnown RBP17.96■□□□□ 0.47
USP48-205ENST00000421625 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms