RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 OR10G9Q8NGN4 311 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR10G7Q8NGN6 311 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 MRPL30Q8TCC3 161 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 SPTAN1Q13813 2472 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 A0A1B0GWB2 263 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 FOXI3A8MTJ6 420 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 GAPDHP04406 335 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 KCNS1Q96KK3 526 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR2A5Q96R48 311 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ISG20L2Q9H9L3 353 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 MOKQ9UQ07 419 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 DTX4Q9Y2E6 619 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 C7orf66A4D0T2 115 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 NME4O00746 187 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 LMO1P25800 156 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ZFP36L2P47974 494 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PCOLCEQ15113 449 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR10G8Q8NGN5 311 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 SLC25A43Q8WUT9 341 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 APOBEC3DQ96AK3 386 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ANAPC16Q96DE5 110 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 GPR132Q9UNW8 380 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV12-1A0A0B4J245 112 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 C17orf51A8MQB3 221 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 E9PQ18 207 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR2A4O95047 310 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PSMB6P28072 239 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 S100A11P31949 105 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ISXQ2M1V0 245 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ACSF3Q4G176 576 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ABLIM2Q6H8Q1 611 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 SPINK14Q6IE38 97 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PQLC3Q8N755 202 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 L3HYPDHQ96EM0 354 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR2A7Q96R45 310 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 CDK5RAP2Q96SN8 1893 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV2A0A0B4J234 112 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PMS2P2O95744 297 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 REG1AP05451 166 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 SLC25A16P16260 332 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 GAS1P54826 345 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 C3AR1Q16581 482 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PRSS48Q7RTY5 328 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF740Q8NDX6 193 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 TMEM174Q8WUU8 243 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 EEF1AKMT3Q96AZ1 226 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RNF122Q9H9V4 155 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 GVINP1Q7Z2Y8 2422 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 A0A1W2PPE3 182 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 NPPCP23582 126 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 LRRC26Q2I0M4 334 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 PYCR3Q53H96 274 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RNF113BQ8IZP6 322 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 POC1AQ8NBT0 407 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 FAM110DQ8TAY7 271 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 TANC2Q9HCD6 1990 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 C1orf167Q5SNV9 1468 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 IGHV3-73A0A0B4J1V6 119 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MGST3O14880 152 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HOXC11O43248 304 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ICOSLGO75144 302 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ASAH2BP0C7U1 165 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 CD37P11049 281 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ATP4BP51164 291 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 AGBL4Q5VU57 503 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF880Q6PDB4 577 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 Q8IYB0 196 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 OR1F12Q8NHA8 337 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 OR5P3Q8WZ94 311 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 KCNK7Q9Y2U2 307 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 TGIF2-C20orf24A0A0A6YYL0 155 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 IGHV3-53P01767 116 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MPLP40238 635 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 FOXA3P55318 350 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 EMX1Q04741 257 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RASL11AQ6T310 242 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 WFDC11Q8NEX6 87 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MPLKIPQ8TAP9 179 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 MS4A3Q96HJ5 214 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 PCYT2Q99447 389 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 WSB1Q9Y6I7 421 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 PQLC2LA1A4F0 135 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HSPB2A8KAH6 182 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 CTSDP07339 412 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-202ENST00000375405 RND2P52198 227 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 CCL8P80075 99 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 GAGE2BQ13066 116 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HSPB2Q16082 182 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 PQLC2Q6ZP29 291 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 DNM1P46Q6ZS02 220 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HSD11B1LQ7Z5J1 315 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 OR10D3Q8NH80 312 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 HDGFL3Q9Y3E1 203 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV8-1A0A0A6YYK1 113 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 C16orf97H3BN30 126 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 IGHG3P01860 377 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 AMY1AP04745 511 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 SPNP16150 400 aa4.06□□□□□ -1.76
SCN1A-202ENST00000375405 FKBP2P26885 142 aaKnown RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms