RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ZNF2Q9BSG1 426 aaPredicted RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 PARD6GQ9BYG4 376 aaPredicted RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 TANC2Q9HCD6 1990 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 FASNP49327 2511 aaKnown RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 NDUFS8O00217 210 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 MBP02144 154 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 NFYAP23511 347 aaPredicted RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 FCGR2CP31995 323 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 NPY4RP50391 375 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 DHRS2Q13268 280 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 SRSF7Q16629 238 aaKnown RBP eCLIP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 LTC4SQ16873 150 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 C10orf91Q5T1B1 145 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 GAPTQ8N292 157 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 ADAD2Q8NCV1 583 aaKnown RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 OR6C3Q9NZP0 311 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 CTSZQ9UBR2 303 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 TACC2O95359 2948 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 PTPN13Q12923 2485 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 TRGV10A0A0A0MS01 117 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 SSTR5P35346 364 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 FXYD4P59646 89 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 RPL31P62899 125 aaKnown RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 ZNF880Q6PDB4 577 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 Q6ZS49 121 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 SSX9Q7RTT3 188 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 SLC16A13Q7RTY0 426 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 OR4A4PQ8NGN8 299 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 GALMQ96C23 342 aa8.32□□□□□ -1.08
HMGB3-201ENST00000325307 MBNL3Q9NUK0 354 aaKnown RBP8.32□□□□□ -1.08
HMGB3-201ENST00000325307 C12orf77C9JDV5 145 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 SPINT2O43291 252 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 CTXN2P0C2S0 81 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 PGAM2P15259 253 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 ZBTB25P24278 435 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 PDLIM4P50479 330 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 HERV-K104P61576 105 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 FAM185AQ8N0U4 392 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 OR8B3Q8NGG8 313 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 OR1L1Q8NH94 360 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TERB2Q8NHR7 220 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TOMM40LQ969M1 308 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 LURAP1Q96LR2 239 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 OR8B2Q96RD0 313 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 BIN3Q9NQY0 253 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 KAAG1Q9UBP8 84 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TRAV14DV4A0A0A6YYC5 116 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 HBZP02008 142 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 KRTAP10-9P60411 292 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 RAP2BP61225 183 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 PPP1R1AQ13522 171 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 SLC25A42Q86VD7 318 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 NINJ1Q92982 152 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 NIT2Q9NQR4 276 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 hADV38S2A0JD32 116 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TNFRSF13BO14836 293 aaPredicted RBP8.31□□□□□ -1.08
HMGB3-201ENST00000325307 DIRAS3O95661 229 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 GZMHP20718 246 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 HERPUD1Q15011 391 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TMEM155Q4W5P6 130 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TRAT1Q6PIZ9 186 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 MARCH1Q8TCQ1 289 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 SFT2D1Q8WV19 159 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 IGFBPL1Q8WX77 278 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 TMEM230Q96A57 120 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 C14orf144Q96I85 54 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 NKX6-2Q9C056 277 aaPredicted RBP8.31□□□□□ -1.08
HMGB3-201ENST00000325307 CLN8Q9UBY8 286 aa8.31□□□□□ -1.08
HMGB3-201ENST00000325307 RBM7Q9Y580 266 aaKnown RBP8.31□□□□□ -1.08
HMGB3-201ENST00000325307 IGKV1-6A0A0C4DH72 117 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 RGS11O94810 467 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 PAX5Q02548 391 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 HMGN3Q15651 99 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 NEIL1Q96FI4 390 aaPredicted RBP8.3□□□□□ -1.08
HMGB3-201ENST00000325307 BPESC1Q9GZL8 116 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 C19orf12Q9NSK7 152 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 OR1A1Q9P1Q5 309 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 GCN1Q92616 2671 aaKnown RBP8.3□□□□□ -1.08
HMGB3-201ENST00000325307 TCAPO15273 167 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 FSTL3O95633 263 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 HLA-AP01891 365 aaKnown RBP8.3□□□□□ -1.08
HMGB3-201ENST00000325307 S100A8P05109 93 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 OMGP23515 440 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 OR2B11Q5JQS5 317 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 AADACL3Q5VUY0 350 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 DHRS7BQ6IAN0 325 aaPredicted RBP8.3□□□□□ -1.08
HMGB3-201ENST00000325307 LHFPL1Q86WI0 220 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 ZDHHC22Q8N966 263 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 FAM168AQ92567 244 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 SLC25A32Q9H2D1 315 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 OR2S2Q9NQN1 319 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 CELSR2Q9HCU4 2923 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 IGHV3-43A0A0B4J1X8 118 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 IGHV3-43DP0DP04 118 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 AADACP22760 399 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 SLC24A4Q8NFF2 622 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 CALYQ9NYX4 217 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 GNG12Q9UBI6 72 aa8.3□□□□□ -1.08
HMGB3-201ENST00000325307 ABCA12Q86UK0 2595 aa8.29□□□□□ -1.08
HMGB3-201ENST00000325307 OR5H14A6NHG9 310 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms