RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LIFP15018 202 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 CD1BP29016 333 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ZNF137PP52743 207 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 SLC35B1P78383 322 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ALKBH6Q3KRA9 238 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 WFIKKN1Q96NZ8 548 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 NDUFAF3Q9BU61 184 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 SH3BGRL3Q9H299 93 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 CKAP5Q14008 2032 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 A0A1B0GV72 72 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 DHRS7CA6NNS2 312 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 LYZL6O75951 148 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 TNFRSF1AP19438 455 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 FHITP49789 147 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ROM1Q03395 351 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 WFDC6Q9BQY6 131 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ABHD14AQ9BUJ0 271 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 MEX3AA1L020 520 aaKnown RBP9.98□□□□□ -0.81
VPS39-201ENST00000318006 H0Y980 276 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 LEPROTL1O95214 131 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ASAH2BP0C7U1 165 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 SMIM10L1P0DMW3 83 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 FOLR2P14207 255 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 FOXL2P58012 376 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 RPS11P62280 158 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS39-201ENST00000318006 MOB3BQ86TA1 216 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 SMIM10Q96HG1 83 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 UCN2Q96RP3 112 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 MYOFQ9NZM1 2061 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 DNPH1O43598 174 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 NPY1RP25929 384 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ZNF83P51522 516 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 ZNF506Q5JVG8 444 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 VSTM2AQ8TAG5 236 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 TAF15Q92804 592 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS39-201ENST00000318006 PERPQ96FX8 193 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 AP5S1Q9NUS5 200 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 CLN8Q9UBY8 286 aa9.98□□□□□ -0.81
VPS39-201ENST00000318006 MPDU1O75352 247 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 KBTBD11O94819 623 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 LYZP61626 148 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 DOLPP1Q86YN1 238 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 A8MWL6 223 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 CXorf66Q5JRM2 361 aaPredicted RBP9.97□□□□□ -0.81
VPS39-201ENST00000318006 IBA57Q5T440 356 aaKnown RBP9.97□□□□□ -0.81
VPS39-201ENST00000318006 ARL6IP6Q8N6S5 226 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 TSPAN2O60636 221 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 DXOO77932 396 aaKnown RBP9.97□□□□□ -0.81
VPS39-201ENST00000318006 MAGEA5P43359 124 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 MRPS11P82912 194 aaKnown RBP9.97□□□□□ -0.81
VPS39-201ENST00000318006 C10orf113Q5VZT2 155 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 TUSC5Q8IXB3 177 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 SLC25A45Q8N413 288 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 TMEM140Q9NV12 185 aa9.97□□□□□ -0.81
VPS39-201ENST00000318006 ISG15P05161 165 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 ZNF708P17019 499 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 SLC23A3Q6PIS1 610 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 LINC00596Q86U02 117 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 OR8G5Q8NG78 346 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.96□□□□□ -0.81
VPS39-201ENST00000318006 TRBV9A0A0B4J1U6 114 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 OR4C46A6NHA9 309 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 B4E171 279 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 TSPAN7P41732 249 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 RBM11P57052 281 aaKnown RBP9.96□□□□□ -0.81
VPS39-201ENST00000318006 SOX8P57073 446 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 RELBQ01201 579 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 MYOZ3Q8TDC0 251 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 LRRC29Q8WV35 223 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 FLYWCH2Q96CP2 140 aaKnown RBP9.96□□□□□ -0.81
VPS39-201ENST00000318006 GLRX2Q9NS18 164 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 PRNDQ9UKY0 176 aa9.96□□□□□ -0.81
VPS39-201ENST00000318006 A0A1W2PP11 408 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 UBE2CO00762 179 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 NDUFB3O43676 98 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 KLF7O75840 302 aaPredicted RBP9.96□□□□□ -0.82
VPS39-201ENST00000318006 ZP4Q12836 540 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 LRRC10Q5BKY1 277 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 OR8B3Q8NGG8 313 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 OR5A2Q8NGI9 324 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 OR4X1Q8NH49 305 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 NUDT16L1Q9BRJ7 211 aaKnown RBP9.96□□□□□ -0.82
VPS39-201ENST00000318006 PEF1Q9UBV8 284 aaKnown RBP9.96□□□□□ -0.82
VPS39-201ENST00000318006 COLQQ9Y215 455 aaPredicted RBP9.96□□□□□ -0.82
VPS39-201ENST00000318006 PXMP4Q9Y6I8 212 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 LCTP09848 1927 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 A0A0G2JMZ2 1700 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 GRIFINA4D1Z8 144 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 AMY1AP04745 511 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 CEBPDP49716 269 aaPredicted RBP9.96□□□□□ -0.82
VPS39-201ENST00000318006 ABHD3Q8WU67 409 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 SMIM8Q96KF7 97 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 NPVFQ9HCQ7 196 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 UFC1Q9Y3C8 167 aa9.96□□□□□ -0.82
VPS39-201ENST00000318006 PIKFYVEQ9Y2I7 2098 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 A0A087WWC5 75 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 SRIP30626 198 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 STARD6P59095 220 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 DCAF10Q5QP82 559 aa9.95□□□□□ -0.82
VPS39-201ENST00000318006 OR1L1Q8NH94 360 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms