RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ZNF345Q14585 488 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 TMEM255AQ5JRV8 349 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 COL5A1-AS1Q5SY13 56 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 C16orf92Q96LL3 132 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 APELAP0DMC3 54 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 PAXXQ9BUH6 204 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 CFDP00746 253 aaPredicted RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 IL17BQ9UHF5 180 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 A0A0B4J293 547 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 NUTF2P61970 127 aaKnown RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 C12orf54Q6X4T0 127 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 SGMS2Q8NHU3 365 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 PPP1R17O96001 155 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 MC5RP33032 325 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 BSXQ3C1V8 233 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 WDR25Q64LD2 544 aaPredicted RBP8.15□□□□□ -1.1
CUX1-201ENST00000292535 PLA2G2FQ9BZM2 168 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 MSL2Q9HCI7 577 aa8.15□□□□□ -1.1
CUX1-201ENST00000292535 MRM2Q9UI43 246 aaKnown RBP8.15□□□□□ -1.11
CUX1-201ENST00000292535 PGFP49763 221 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 MARVELD1Q9BSK0 173 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 LPAR2Q9HBW0 351 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 SH2D5Q6ZV89 423 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 TXNDC17Q9BRA2 123 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 HINT1P49773 126 aaPredicted RBP8.15□□□□□ -1.11
CUX1-201ENST00000292535 DNLZQ5SXM8 178 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 OR8D4Q8NGM9 314 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 R4GN57 208 aa8.15□□□□□ -1.11
CUX1-201ENST00000292535 IGHV3OR15-7A0A075B7D8 119 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 BCL2P10415 239 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 PKIAP61925 76 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 TMEM45BQ96B21 275 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 DCTN5Q9BTE1 182 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 GPR35Q9HC97 309 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 QSER1Q2KHR3 1735 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 GPR6P46095 362 aaPredicted RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 FAM3BP58499 235 aaPredicted RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 TCF24Q7RTU0 167 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 OPN4Q9UHM6 478 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 PLXND1Q9Y4D7 1925 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 PATE4P0C8F1 98 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 WNT5AP41221 380 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 SELENOTP62341 195 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 P2RY6Q15077 328 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 A0A087X0M5 115 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 A0A1B0GX30 115 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 STPG2Q8N412 459 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 FSCN3Q9NQT6 498 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 KBTBD11O94819 623 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 MPZL1O95297 269 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 ZNF137PP52743 207 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 TMEM30BQ3MIR4 351 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 TEPPQ6URK8 271 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 MDP1Q86V88 176 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 AMY1AP04745 511 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 LINC00869P0C866 280 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 OR10J1P30954 320 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 COL10A1Q03692 680 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 INSL4Q14641 139 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 ABHD14BQ96IU4 210 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 ABHD1Q96SE0 405 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 RHNO1Q9BSD3 238 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 TMEFF2Q9UIK5 374 aaPredicted RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 GAPDHP04406 335 aaKnown RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 CRHP06850 196 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 PRELID3AQ96N28 172 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 CISD3P0C7P0 127 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 NUBP1P53384 320 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 SNRPD3P62318 126 aaKnown RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 CEACAM21Q3KPI0 293 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 LRRC75AQ8NAA5 344 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 GPA33Q99795 319 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 HILPDAQ9Y5L2 63 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 CLDN14O95500 239 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 HLA-DQA1P01909 254 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 CTGFP29279 349 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 BVESQ8NE79 360 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 SMDT1Q9H4I9 107 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 MGST3O14880 152 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 ATP5G2Q06055 141 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 C21orf62-AS1Q17RA5 79 aa8.14□□□□□ -1.11
CUX1-201ENST00000292535 QTRT1Q9BXR0 403 aaKnown RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 GEMIN7Q9H840 131 aaKnown RBP8.14□□□□□ -1.11
CUX1-201ENST00000292535 IGHV5-10-1A0A0J9YXX1 117 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 PLAURQ03405 335 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 PLPPR5Q32ZL2 321 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 NHSQ6T4R5 1651 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 BRCA1P38398 1863 aaKnown RBP8.13□□□□□ -1.11
CUX1-201ENST00000292535 C1orf185Q5T7R7 199 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 C2orf88Q9BSF0 95 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 FRRS1LQ9P0K9 344 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 WIPI2Q9Y4P8 454 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 J3QR06 171 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 HBZP02008 142 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 PSG9Q00887 426 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 NRIP2Q9BQI9 281 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 TLN1Q9Y490 2541 aaKnown RBP8.13□□□□□ -1.11
CUX1-201ENST00000292535 RPL36A-HNRNPH2H7BZ11 118 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 SIGLEC14Q08ET2 396 aa8.13□□□□□ -1.11
CUX1-201ENST00000292535 RNFT1Q5M7Z0 435 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms