RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PLA2G5P39877 138 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 HNF4GQ14541 408 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 SIGIRRQ6IA17 410 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF680Q8NEM1 530 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 VSTM2AQ8TAG5 236 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF596Q8TC21 504 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 CHAC2Q8WUX2 184 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 TNRC6BQ9UPQ9 1833 aaKnown RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1W2PRD5 423 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1W2PRF3 423 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1W2PRM7 423 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 GNB1P62873 340 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 DCAF12L2Q5VW00 463 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 DHRS11Q6UWP2 260 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 OR2C3Q8N628 320 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 FAM213BQ8TBF2 198 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 TMED6Q8WW62 240 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 GNPNAT1Q96EK6 184 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 HRH4Q9H3N8 390 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 GCM1Q9NP62 436 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 A0A1B0GU03 582 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 DEFA4P12838 97 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF497Q6ZNH5 498 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 FAM219AQ8IW50 185 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ST8SIA2Q92186 375 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 INSIG2Q9Y5U4 225 aa9.75□□□□□ -0.85
VPS4A-201ENST00000254950 ANKRD11Q6UB99 2663 aaPredicted RBP9.75□□□□□ -0.85
VPS4A-201ENST00000254950 BTBD17A6NE02 478 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 RRASP10301 218 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 ANKRD55Q3KP44 614 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 SDSLQ96GA7 329 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 FAM210AQ96ND0 272 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 BARX1Q9HBU1 254 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-201ENST00000254950 PPIAL4CA0A0B4J2A2 164 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 SYNGR2O43760 224 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF735P0CB33 412 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 PPIAL4GP0DN37 164 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 PDLIM4P50479 330 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 MEF2CQ06413 473 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-201ENST00000254950 OR2G3Q8NGZ4 309 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 PINX1Q96BK5 328 aaKnown RBP9.74□□□□□ -0.85
VPS4A-201ENST00000254950 DCTN5Q9BTE1 182 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 FKBP11Q9NYL4 201 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 IGKV1D-8A0A087WSZ0 117 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF818PQ6ZRF7 136 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 H1FOOQ8IZA3 346 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-201ENST00000254950 SLC35E1Q96K37 410 aa9.74□□□□□ -0.85
VPS4A-201ENST00000254950 KRTAP27-1Q3LI81 207 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 DRAM1Q8N682 238 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 TMEM56Q96MV1 263 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 GPHA2Q96T91 129 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 CCL19Q99731 98 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 LPAR2Q9HBW0 351 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 KIAA2026Q5HYC2 2103 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 TRBV6-7A0A0A0MS04 114 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 E7EQL1 145 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 FGF2P09038 288 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 EXOSC2Q13868 293 aaKnown RBP9.73□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF355PQ9NSJ1 428 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 RCC2Q9P258 522 aaKnown RBP9.73□□□□□ -0.85
VPS4A-201ENST00000254950 TRBV23-1A0A0A0MS06 115 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 A0A0B4J293 547 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 FAM24AA6NFZ4 105 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 NAPSAO96009 420 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 HBE1P02100 147 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 LIPFP07098 398 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 TLE4Q04727 773 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 FLYWCH2Q96CP2 140 aaKnown RBP9.73□□□□□ -0.85
VPS4A-201ENST00000254950 HARBI1Q96MB7 349 aa9.73□□□□□ -0.85
VPS4A-201ENST00000254950 KBTBD11-OT1A0A1B0GTJ5 212 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 HPRT1P00492 218 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 TFF1P04155 84 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 G6PCP35575 357 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 CDKN1AP38936 164 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 TMEM33P57088 247 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF835Q9Y2P0 537 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 MED12LQ86YW9 2145 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 ATRXP46100 2492 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 DVL1O14640 695 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 SIGLEC5O15389 551 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 PSPNO60542 156 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 SRSF7Q16629 238 aaKnown RBP eCLIP9.72□□□□□ -0.85
VPS4A-201ENST00000254950 C9orf152Q5JTZ5 239 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 Q6ZR03 302 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 Q6ZSR3 168 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 OR9G1Q8NH87 305 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 LEAP2Q969E1 77 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 GALNT14Q96FL9 552 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 PIMREGQ9BSJ6 248 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 PCGF1Q9BSM1 259 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 UNKLQ9H9P5 680 aaKnown RBP9.72□□□□□ -0.85
VPS4A-201ENST00000254950 LINC00312Q9Y6C7 94 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 LOC105371242A0A075B767 164 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 M0R036 132 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 CHST1O43916 411 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 REG1BP48304 166 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 ZNF324BQ6AW86 544 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-201ENST00000254950 NEUROG1Q92886 237 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 RSRP1Q9BUV0 290 aa9.72□□□□□ -0.85
VPS4A-201ENST00000254950 TRAF4Q9BUZ4 470 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms