RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 SLC25A5P05141 298 aaKnown RBP11.09□□□□□ -0.63
USP40-201ENST00000251722 SEC11BP0C7V7 166 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 KCNE5Q9UJ90 142 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 K7N7A8 449 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 FOXH1O75593 365 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 PRDX2P32119 198 aa11.09□□□□□ -0.63
USP40-201ENST00000251722 DEFB108AA8MXU0 73 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 IGHMP01871 453 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 FAM87AP0C7U9 286 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 HTR1DP28221 377 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 RPL31P62899 125 aaKnown RBP11.08□□□□□ -0.64
USP40-201ENST00000251722 NRN1LQ496H8 165 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 SLC25A47Q6Q0C1 308 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 OR2C3Q8N628 320 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 CISD1Q9NZ45 108 aaKnown RBP11.08□□□□□ -0.64
USP40-201ENST00000251722 ZNF256Q9Y2P7 627 aaPredicted RBP11.08□□□□□ -0.64
USP40-201ENST00000251722 ZNF236Q9UL36 1845 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 SYNGR1O43759 233 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 GUCA2AQ02747 115 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 A0A1W2PS18 150 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 H3BMH7 237 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 RPS4Y1P22090 263 aaKnown RBP11.08□□□□□ -0.64
USP40-201ENST00000251722 FRRS1LQ9P0K9 344 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 CHTOPQ9Y3Y2 248 aaKnown RBP11.08□□□□□ -0.64
USP40-201ENST00000251722 IZUMO4Q1ZYL8 232 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 PRDM14Q9GZV8 571 aa11.08□□□□□ -0.64
USP40-201ENST00000251722 A0A1W2PQM1 296 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 MPZL1O95297 269 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 PATE4P0C8F1 98 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 ABHD1Q96SE0 405 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 CHODLQ9H9P2 273 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 ZNF638Q14966 1978 aaKnown RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 TRIP11Q15643 1979 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 OR2T8A6NH00 312 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 HRKO00198 91 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 OR5AL1P0C617 328 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 GLI4P10075 376 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 JOSD1Q15040 202 aaPredicted RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 OR8G5Q8NG78 346 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 NEU4Q8WWR8 484 aaPredicted RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 SYNGR2O43760 224 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 PGA4P0DJD7 388 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 RBM11P57052 281 aaKnown RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 TMEM52Q8NDY8 209 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 ORAOV1Q8WV07 137 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 MSL2Q9HCI7 577 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 FGF12P61328 243 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 PDPNQ86YL7 162 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 OR5A1Q8NGJ0 315 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 HARBI1Q96MB7 349 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 WDR13Q9H1Z4 485 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 FBXL17Q9UF56 701 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 LAMTOR2Q9Y2Q5 125 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 POLR2AP24928 1970 aaKnown RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 SCN10AQ9Y5Y9 1956 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 HPXP02790 462 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 MMP9P14780 707 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 HLA-GP17693 338 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 RCC1P18754 421 aaPredicted RBP11.07□□□□□ -0.64
USP40-201ENST00000251722 FAM27D1Q5T7N8 215 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 C1QL3Q5VWW1 255 aa11.07□□□□□ -0.64
USP40-201ENST00000251722 IGKV1-8A0A0C4DH67 115 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 DLL1O00548 723 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 PGA5P0DJD9 388 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 TBC1D26Q86UD7 250 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 LPAR5Q9H1C0 372 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 FAM24AA6NFZ4 105 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 SYNGR3O43761 229 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 PPYP01298 95 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 SEMG1P04279 462 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 ADRA2AP08913 450 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 ROM1Q03395 351 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 RNFT1Q5M7Z0 435 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 ERASQ7Z444 233 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 GFRA1P56159 465 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 PCSK4Q6UW60 755 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 STPG3Q8N7X2 389 aa11.06□□□□□ -0.64
USP40-201ENST00000251722 ZNF385AQ96PM9 386 aaKnown RBP11.06□□□□□ -0.64
USP40-201ENST00000251722 MRPL13Q9BYD1 178 aaKnown RBP11.06□□□□□ -0.64
USP40-201ENST00000251722 IGHV3-43A0A0B4J1X8 118 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 HYAL3O43820 417 aaPredicted RBP11.05□□□□□ -0.64
USP40-201ENST00000251722 MT-ND6P03923 174 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 IGHV3-43DP0DP04 118 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 PSG4Q00888 419 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 PMP22Q01453 160 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 OTPQ5XKR4 325 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 FFAR1O14842 300 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 ISG15P05161 165 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 LIPFP07098 398 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 LYZP61626 148 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 Q5BKY6 102 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 PPP1R32Q7Z5V6 425 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 HOGA1Q86XE5 327 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 ZPLD1Q8TCW7 415 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 JKAMPQ9P055 326 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 GNG4P50150 75 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 GZMMP51124 257 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 UBE2V1Q13404 147 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 PPP1R1AQ13522 171 aa11.05□□□□□ -0.64
USP40-201ENST00000251722 TIMM23BQ5SRD1 257 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms