RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PGA5P0DJD9 388 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 MMP9P14780 707 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 TEPPQ6URK8 271 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 SPSB2Q99619 263 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 TUBD1Q9UJT1 453 aa12.12□□□□□ -0.47
CPSF1-212ENST00000616140 A0A0G2JK05 382 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 HELTA6NFD8 242 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 TMEM14DPA8MWL7 114 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 J3QR06 171 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 K7ESF4 209 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 NEURL1O76050 574 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 CEACAM3P40198 252 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 AQP10Q96PS8 301 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 LYRM2Q9NU23 88 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 GOLT1BQ9Y3E0 138 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 RALGAPA1Q6GYQ0 2036 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 TMEM210A6NLX4 147 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 CD3EP07766 207 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 FREM3P0C091 2139 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 APELAP0DMC3 54 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 USF1P22415 310 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 PRDX2P32119 198 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 ZNF362Q5T0B9 420 aaPredicted RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 RIPPLY2Q5TAB7 128 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 NHLRC2Q8NBF2 726 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 SGMS2Q8NHU3 365 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 RAB1CQ92928 201 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 FLYWCH2Q96CP2 140 aaKnown RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 RHOVQ96L33 236 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 M0R296 226 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 CCL8P80075 99 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 ZNF826PQ6ZT77 177 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 LRRC75AQ8NAA5 344 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 TMEM204Q9BSN7 226 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 PITPNC1Q9UKF7 332 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 TCAPO15273 167 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 SNRPCP09234 159 aaKnown RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 SMIM17P0DL12 118 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 FGF5P12034 268 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 RPL31P62899 125 aaKnown RBP12.11□□□□□ -0.47
CPSF1-212ENST00000616140 OR52L2PQ8NGH6 319 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 PIPOXQ9P0Z9 390 aa12.11□□□□□ -0.47
CPSF1-212ENST00000616140 SNURFLB1AK76 121 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 NPIPB9F8W1W9 429 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 H0Y980 276 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 PDE6DO43924 150 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 HKR1P10072 659 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 CD1BP29016 333 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 IER3P46695 156 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 REG1BP48304 166 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 DPPA3Q6W0C5 159 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 OR4X1Q8NH49 305 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 RNF2Q99496 336 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 SBF2Q86WG5 1849 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 A0A0B4J293 547 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 M0QZ24 198 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 HBZP02008 142 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 COL8A1P27658 744 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 ID4P47928 161 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 UCP2P55851 309 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 HLA-DRB5Q30154 266 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 NSUN5P2Q63ZY6 315 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 WASHC3Q9Y3C0 194 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 NEUROG3Q9Y4Z2 214 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 INSIG2Q9Y5U4 225 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 PTBP3O95758 552 aaKnown RBP12.1□□□□□ -0.47
CPSF1-212ENST00000616140 KLK2P20151 261 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 HOXA6P31267 233 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 FAM214BQ7L5A3 538 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 WIPI2Q9Y4P8 454 aa12.1□□□□□ -0.47
CPSF1-212ENST00000616140 CBY3A6NI87 242 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 TIAF1O95411 115 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 OR2H2O95918 312 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 CD74P04233 296 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 COL10A1Q03692 680 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 LRP11Q86VZ4 500 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 OR1L8Q8NGR8 309 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 Q96M66 194 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 DOCK10Q96BY6 2186 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 PCNX1Q96RV3 2341 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 GNG7O60262 68 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 RAMP1O60894 148 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 EIF3GO75821 320 aaKnown RBP eCLIP12.09□□□□□ -0.47
CPSF1-212ENST00000616140 FAM87AP0C7U9 286 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 OR4C5Q8NGB2 326 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 TGFBR3LH3BV60 316 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 J3QR89 54 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 MEF2BQ02080 365 aaPredicted RBP12.09□□□□□ -0.47
CPSF1-212ENST00000616140 UNC119Q13432 240 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 IZUMO4Q1ZYL8 232 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 NR2C2APQ86WQ0 139 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 SAP25Q8TEE9 199 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 RGPD4Q7Z3J3 1758 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 A0A1W2PR77 199 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 H0YL77 283 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 MGST3O14880 152 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 ADAM11O75078 769 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 CXorf1O96002 111 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 OR4A8P0C604 315 aa12.09□□□□□ -0.47
CPSF1-212ENST00000616140 NPBWR2P48146 333 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms