RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TXN2Q99757 166 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 ATP5SQ99766 215 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BNQ99877 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 HIST1H2BMQ99879 126 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 PRDM13Q9H4Q3 707 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 PSENENQ9NZ42 101 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 TRAPPC2LQ9UL33 140 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 SELENOKQ9Y6D0 94 aa13.04□□□□□ -0.32
UPF1-204ENST00000596842 RHBDL1O75783 438 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 OR3A1P47881 315 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 BTNL3Q6UXE8 466 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 MED13Q9UHV7 2174 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 KIR2DS1A0A191URI9 304 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 A0A1W2PPQ1 181 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 PTBP3O95758 552 aaKnown RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 CLDN1O95832 211 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 DEFA4P12838 97 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 KIR2DS4P43632 304 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 UCP3P55916 312 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 KIR2DS1Q14954 304 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 Q6ZRM9 215 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 CLDN23Q96B33 292 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 RBMXL1Q96E39 390 aaKnown RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 SF3B5Q9BWJ5 86 aaKnown RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 PARD6AQ9NPB6 346 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 LOC400499M0QZD8 3231 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 FOXL2NBQ6ZUU3 175 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 MCEMP1Q8IX19 187 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 ST6GALNAC3Q8NDV1 305 aa13.03□□□□□ -0.32
UPF1-204ENST00000596842 FGF23Q9GZV9 251 aaPredicted RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 AURKAIP1Q9NWT8 199 aaPredicted RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 CNOT1A5YKK6 2376 aaKnown RBP13.03□□□□□ -0.32
UPF1-204ENST00000596842 F2RP25116 425 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 VAMP3Q15836 100 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 CXorf67Q86X51 503 aaPredicted RBP13.02□□□□□ -0.32
UPF1-204ENST00000596842 C1orf87Q8N0U7 546 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 CLDND2Q8NHS1 167 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 SIGLEC12Q96PQ1 595 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 DNAJC4Q9NNZ3 241 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 TAAR3PQ9P1P4 343 aa13.02□□□□□ -0.32
UPF1-204ENST00000596842 ZNF503-AS2A6NEH8 195 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 CYB5R3P00387 301 aaPredicted RBP13.02□□□□□ -0.33
UPF1-204ENST00000596842 PMP22Q01453 160 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 PLP2Q04941 152 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 TMEM42Q69YG0 159 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 KRASP01116 189 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 B3GALT5-AS1P59052 145 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 TAS2R30P59541 319 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 PLGLB1Q02325 96 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 PAX5Q02548 391 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 IL11RAQ14626 422 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 OR8B8Q15620 311 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 LTC4SQ16873 150 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 ZNF664Q8N3J9 261 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 OR4C5Q8NGB2 326 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 OR5B12Q96R08 314 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 NDUFAF3Q9BU61 184 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 TP53TG5Q9Y2B4 290 aa13.02□□□□□ -0.33
UPF1-204ENST00000596842 EP300Q09472 2414 aaPredicted RBP13.01□□□□□ -0.33
UPF1-204ENST00000596842 IFITM10A6NMD0 228 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 K7ESF4 209 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 STARD6P59095 220 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 SLC25A22Q9H936 323 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 ANKRD30BLA7E2S9 258 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 DEGS1O15121 323 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 PPIHO43447 177 aaKnown RBP13.01□□□□□ -0.33
UPF1-204ENST00000596842 HBE1P02100 147 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 FGF12P61328 243 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 Q0VFX4 171 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 C22orf15Q8WYQ4 148 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 SDSLQ96GA7 329 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 TMEM56Q96MV1 263 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 WDR54Q9H977 334 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 TMEM56-RWDD3S4R434 201 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 CADP27708 2225 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 CD33P20138 364 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 ERVS71-1P61550 626 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 ID3Q02535 119 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 ZNF816Q0VGE8 651 aaPredicted RBP13.01□□□□□ -0.33
UPF1-204ENST00000596842 NMSQ5H8A3 153 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 FAM53AQ6NSI3 398 aaPredicted RBP13.01□□□□□ -0.33
UPF1-204ENST00000596842 ODF3L1Q8IXM7 274 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 LHX4Q969G2 390 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 C2orf88Q9BSF0 95 aa13.01□□□□□ -0.33
UPF1-204ENST00000596842 DLEU1O43261 78 aa13□□□□□ -0.33
UPF1-204ENST00000596842 GRPP07492 148 aa13□□□□□ -0.33
UPF1-204ENST00000596842 FGF5P12034 268 aa13□□□□□ -0.33
UPF1-204ENST00000596842 CEBPDP49716 269 aaPredicted RBP13□□□□□ -0.33
UPF1-204ENST00000596842 ARL16Q0P5N6 197 aa13□□□□□ -0.33
UPF1-204ENST00000596842 EIF3IQ13347 325 aaKnown RBP13□□□□□ -0.33
UPF1-204ENST00000596842 DAZAP2Q15038 168 aaPredicted RBP13□□□□□ -0.33
UPF1-204ENST00000596842 M1APQ8TC57 530 aa13□□□□□ -0.33
UPF1-204ENST00000596842 SLC39A9Q9NUM3 307 aa13□□□□□ -0.33
UPF1-204ENST00000596842 ATP23Q9Y6H3 246 aa13□□□□□ -0.33
UPF1-204ENST00000596842 PDGFBP01127 241 aaPredicted RBP13□□□□□ -0.33
UPF1-204ENST00000596842 UCP1P25874 307 aa13□□□□□ -0.33
UPF1-204ENST00000596842 PAX9P55771 341 aa13□□□□□ -0.33
UPF1-204ENST00000596842 UCP2P55851 309 aa13□□□□□ -0.33
UPF1-204ENST00000596842 CLN3Q13286 438 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms