RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 MRPL57Q9BQC6 102 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 GINS3Q9BRX5 216 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 ZNF649Q9BS31 505 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 ADAT1Q9BUB4 502 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 FAIM2Q9BWQ8 316 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 MAP1LC3AQ9H492 121 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 RETNQ9HD89 108 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 SH2D2AQ9NP31 389 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 SPANXA1Q9NS26 97 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 CBLN4Q9NTU7 201 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 GPATCH2LQ9NWQ4 482 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 GALPQ9UBC7 116 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 NAT8Q9UHE5 227 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 IKZF2Q9UKS7 526 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 MMP17Q9ULZ9 603 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 LAMTOR2Q9Y2Q5 125 aa2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 YARS2Q9Y2Z4 477 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 YLPM1P49750 1951 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 KDM5AP29375 1690 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-202ENST00000577300 MYH7P12883 1935 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 PALLDQ8WX93 1383 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TONSLQ96HA7 1378 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ABCC5O15440 1437 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SHROOM2Q13796 1616 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 A0A087WUU8 490 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 NSG1A0A0A6YYJ2 146 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 IGHV2OR16-5A0A0B4J2B6 119 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SMIM28A0A1B0GU29 152 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 A0A1B0GW55 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 A0A1W2PRF3 423 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 A0A1W2PRM7 423 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 LRP5LA4QPB2 252 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 MAP1LC3B2A6NCE7 125 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 F5H5K5 113 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ENSAO43768 121 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OR2T1O43869 369 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SCGNO76038 276 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 NDUFA7O95182 113 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 IGLV3-19P01714 112 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 MT-ND4LP03901 98 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OPN1SWP03999 348 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 P04436 131 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 CD2P06729 351 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ADRA2AP08913 450 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 GIPP09681 153 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L2P0CJ85 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L3P0CJ86 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L5P0CJ88 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L6P0CJ89 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L7P0CJ90 424 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 GZMBP10144 247 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ZNF14P17017 642 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 CSRP1P21291 193 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 HIST1H1TP22492 207 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 MIPP30301 263 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 NSG1P42857 185 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 GPR6P46095 362 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 FOXA1P55317 472 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 RAB38P57729 211 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TCTAP57738 103 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 UBE2SQ16763 222 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SLC25A52Q3SY17 297 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TIGITQ495A1 244 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ATP6AP1LQ52LC2 224 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 HIST2H3PS2Q5TEC6 136 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 WDR74Q6RFH5 385 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DUX4L9Q6RFH8 374 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 AGTRAPQ6RW13 159 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ALKAL2Q6UX46 152 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 FBXW12Q6X9E4 464 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 CALHM3Q86XJ0 350 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 HIST3H2BBQ8N257 126 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SVBPQ8N300 66 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 BPIFB2Q8N4F0 458 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ZADH2Q8N4Q0 377 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TMEM86BQ8N661 226 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 EID2Q8N6I1 236 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TCTEX1D1Q8N7M0 179 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 FER1L6-AS1Q8NA97 138 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OR4C13Q8NGP0 309 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OR2T27Q8NH04 317 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OR5W2Q8NH69 310 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 PLPPR1Q8TBJ4 325 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 SFXN5Q8TD22 340 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 ACER1Q8TDN7 264 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 C10orf82Q8WW14 230 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TMEM159Q96B96 161 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 TIMD4Q96H15 378 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 BTF3L4Q96K17 158 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 LINC00477Q96M19 166 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 CCDC115Q96NT0 180 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 MS4A4EQ96PG1 132 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 APOL4Q9BPW4 351 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 EFCAB11Q9BUY7 163 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 OR11A1Q9GZK7 315 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 MAP1LC3BQ9GZQ8 125 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 LPAR5Q9H1C0 372 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 GTSF1LQ9H1H1 148 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 DEFB129Q9H1M3 183 aa2.36□□□□□ -2.03
SMCHD1-202ENST00000577300 CWH43Q9H720 699 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms