RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 APOBEC3DQ96AK3 386 aaPredicted RBP12.36□□□□□ -0.43
VPS35-210ENST00000568784 VAX2Q9UIW0 290 aa12.36□□□□□ -0.43
VPS35-210ENST00000568784 ZNF716A6NP11 495 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 HIST1H1BP16401 226 aaKnown RBP12.35□□□□□ -0.43
VPS35-210ENST00000568784 ABHD17BQ5VST6 288 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 KCNE4Q8WWG9 221 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 IMMP1LQ96LU5 166 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 RAC2P15153 192 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 TGFBR3Q03167 851 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 TPRX1Q8N7U7 411 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 HINT2Q9BX68 163 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 OR51I2Q9H344 312 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 ZNF391Q9UJN7 358 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 SIT1Q9Y3P8 196 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 POLEQ07864 2286 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 WDFY3Q8IZQ1 3526 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 LRRC3CA6NJW4 275 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 PAGE4O60829 102 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 OPN1MWP04001 364 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 OPN1MW2P0DN77 364 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 OPN1MW3P0DN78 364 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 COL19A1Q14993 1142 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 FFAR4Q5NUL3 377 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 OR5D13Q8NGL4 314 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 MRPL30Q8TCC3 161 aaKnown RBP12.35□□□□□ -0.43
VPS35-210ENST00000568784 DNASE2BQ8WZ79 361 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 KCNIP1Q9NZI2 227 aa12.35□□□□□ -0.43
VPS35-210ENST00000568784 PAX9P55771 341 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 UCP2P55851 309 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 COL10A1Q03692 680 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 SSX7Q7RTT5 188 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 C1QL4Q86Z23 238 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 FRYQ5TBA9 3013 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 ELOA3CA0A087WX78 387 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 CDIPTO14735 213 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 GABRA2P47869 451 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 C14orf144Q96I85 54 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 HIST1H2BLQ99880 126 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 DEPPQ9NTK1 212 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 DLL3Q9NYJ7 618 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 ABCA1O95477 2261 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 KIAA1324LA8MWY0 1029 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 KLF7O75840 302 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 SNRPCP09234 159 aaKnown RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 CEACAM21Q3KPI0 293 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 FAM90A2PQ658T7 463 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 ZNF573Q86YE8 665 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 OR10G4Q8NGN3 311 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 OR10G9Q8NGN4 311 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 OR10G7Q8NGN6 311 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 OR4X1Q8NH49 305 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 A0A1B0GU03 582 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 PINLYPA6NC86 204 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 PDGFBP01127 241 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 TFF1P04155 84 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 NDUFB7P17568 137 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 GNG3P63215 75 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 HOXA4Q00056 320 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 PNRC1Q12796 327 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 P2RY6Q15077 328 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 OBP2BQ9NPH6 170 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 SEMA5BQ9P283 1151 aa12.34□□□□□ -0.43
VPS35-210ENST00000568784 BOKQ9UMX3 212 aaPredicted RBP12.34□□□□□ -0.43
VPS35-210ENST00000568784 ZNF320A2RRD8 509 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 EDDM3BP56851 147 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 PKIAP61925 76 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 FAM78BQ5VT40 261 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 TMEM42Q69YG0 159 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 FAM53AQ6NSI3 398 aaPredicted RBP12.33□□□□□ -0.44
VPS35-210ENST00000568784 MRGPRGQ86SM5 289 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 M1APQ8TC57 530 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 OR2D2Q9H210 308 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 PITPNC1Q9UKF7 332 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 A0A087WWC5 75 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 SERPINA7P05543 415 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 OR3A1P47881 315 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 MEF2BQ02080 365 aaPredicted RBP12.33□□□□□ -0.44
VPS35-210ENST00000568784 EDDM3AQ14507 147 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 GGNQ86UU5 652 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 ATG101Q9BSB4 218 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 PCED1AQ9H1Q7 454 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 SDF2L1Q9HCN8 221 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 TMEM9BQ9NQ34 198 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 A0A1W2PPV4 95 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 ZNF525Q8N782 197 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 SAP25Q8TEE9 199 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 PLSCR2Q9NRY7 297 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 LIN7CQ9NUP9 197 aaKnown RBP12.33□□□□□ -0.44
VPS35-210ENST00000568784 B4GALT7Q9UBV7 327 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 NAT8Q9UHE5 227 aa12.33□□□□□ -0.44
VPS35-210ENST00000568784 MAGEA5P43359 124 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 IL11RAQ14626 422 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 TMEM41BQ5BJD5 291 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 TRIM61Q5EBN2 209 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 TMPRSS7Q7RTY8 843 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 OR10P1Q8NGE3 313 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 TAF15Q92804 592 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS35-210ENST00000568784 DEFB127Q9H1M4 99 aa12.32□□□□□ -0.44
VPS35-210ENST00000568784 PATZ1Q9HBE1 687 aaKnown RBP12.32□□□□□ -0.44
VPS35-210ENST00000568784 MED12LQ86YW9 2145 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms