RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CCL17Q92583 94 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 ARL11Q969Q4 196 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 SEC22AQ96IW7 307 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 C2orf50Q96LR7 162 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 TMEM246Q9BRR3 403 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 NMES1Q9C002 83 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 TMEM106BQ9NUM4 274 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 RDH8Q9NYR8 311 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 METRNQ9UJH8 293 aa7.44□□□□□ -1.22
VPS39-207ENST00000563692 UBE2J1Q9Y385 318 aaPredicted RBP7.44□□□□□ -1.22
VPS39-207ENST00000563692 CSPG4Q6UVK1 2322 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TRAV39A0A0B4J263 110 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 IGHV1-69-2A0A0G2JMI3 117 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 ODAMA1E959 279 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 RNF212BA8MTL3 300 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 C12orf77C9JDV5 145 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TMEM178BH3BS89 294 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 HSD17B6O14756 317 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 PHF1O43189 567 aaPredicted RBP7.43□□□□□ -1.22
VPS39-207ENST00000563692 HBZP02008 142 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 GYPAP02724 150 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 HOXB5P09067 269 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 OR5AC1P0C628 307 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 SLC25A4P12235 298 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 PSMB6P28072 239 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 PPOXP50336 477 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 P2RX3P56373 397 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 EDDM3BP56851 147 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 DSCR9P59020 149 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 EDDM3AQ14507 147 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TMEM187Q14656 261 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 CR1LQ2VPA4 569 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 ANKRD55Q3KP44 614 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 LY6G6FQ5SQ64 297 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 DCAF12L2Q5VW00 463 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TMEM65Q6PI78 240 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 CLEC2AQ6UVW9 174 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 ZNF788Q6ZQV5 615 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TBC1D26Q86UD7 250 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 C9orf62Q8N4C0 152 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 ZNRF1Q8ND25 227 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 BVESQ8NE79 360 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 OR11H4Q8NGC9 324 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 FAM216AQ8WUB2 273 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 COQ2Q96H96 371 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TOLLIPQ9H0E2 274 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 RAB1BQ9H0U4 201 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 OR2S2Q9NQN1 319 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 CCL28Q9NRJ3 127 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 ZFP57Q9NU63 452 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 MAB21L2Q9Y586 359 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 HIVEP2P31629 2446 aa7.43□□□□□ -1.22
VPS39-207ENST00000563692 TRGV10A0A0A0MS01 117 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 hADV38S2A0JD32 116 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 RNF223E7ERA6 249 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 L7N2F9 121 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 CCSO14618 274 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 SIGLEC5O15389 551 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 PGLYRP1O75594 196 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 IGHV4-39P01824 125 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 RLN2P04090 185 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 OR8U9P0C7N5 309 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 PET100P0DJ07 73 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 HOXB4P17483 251 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 NUP62P37198 522 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 MSMO1Q15800 293 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 TMEM30BQ3MIR4 351 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 SP6Q3SY56 376 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 LGALSLQ3ZCW2 172 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 ESCO2Q56NI9 601 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 Q5BKY6 102 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 FAM201AQ5SY85 155 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 C11orf87Q6NUJ2 197 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 ZNF818PQ6ZRF7 136 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 C5orf24Q7Z6I8 188 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 ZNF546Q86UE3 836 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 LDLRAD3Q86YD5 345 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 ZNF695Q8IW36 515 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 ZCCHC24Q8N2G6 241 aaKnown RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 OR13A1Q8NGR1 328 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 OR8U1Q8NH10 309 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 OR1L1Q8NH94 360 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 EDARADDQ8WWZ3 215 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 WDR89Q96FK6 387 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 CCL13Q99616 98 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 REG4Q9BYZ8 158 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 TMEM222Q9H0R3 208 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 GSKIPQ9P0R6 139 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 OR1A1Q9P1Q5 309 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 TMED3Q9Y3Q3 217 aa7.42□□□□□ -1.22
VPS39-207ENST00000563692 RAI1Q7Z5J4 1906 aaPredicted RBP7.42□□□□□ -1.22
VPS39-207ENST00000563692 FXYD6-FXYD2A0A087WZ82 144 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 IGKV1D-13A0A0B4J2D9 117 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 A0A0D9SG52 128 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 DUXBA0A1W2PPF3 345 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 TMPRSS2O15393 492 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 ARPC5O15511 151 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 NDUFB3O43676 98 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 YPEL1O60688 119 aa7.41□□□□□ -1.22
VPS39-207ENST00000563692 TSC22D2O75157 780 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms