RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 ZNF69Q9UC07 566 aa7.85□□□□□ -1.15
CUX1-216ENST00000558469 JPT1Q9UK76 154 aa7.85□□□□□ -1.15
CUX1-216ENST00000558469 KCNS2Q9ULS6 477 aa7.85□□□□□ -1.15
CUX1-216ENST00000558469 A0A087X0M5 115 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 IGHV2-26A0A0B4J1V2 119 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 A0A1B0GX30 115 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 A0A1W2PRD5 423 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 A0A1W2PRF3 423 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 A0A1W2PRM7 423 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 RNASEK-C17orf49H0YIS7 233 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 TOR1AO14656 332 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 YPEL1O60688 119 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 UPK1BO75841 260 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 LY6G6DO95868 133 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 AMY2AP04746 511 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 FOSL1P15407 271 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 ZNF134P52741 427 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 PRRX1P54821 245 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 MEF2DQ14814 521 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 VAX1Q5SQQ9 334 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 NCR3LG1Q68D85 454 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 HCP5Q6MZN7 132 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 C16orf87Q6PH81 154 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 DHRS11Q6UWP2 260 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 H1FOOQ8IZA3 346 aaPredicted RBP7.84□□□□□ -1.15
CUX1-216ENST00000558469 OR4C16Q8NGL9 310 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 OR56B4Q8NH76 319 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 TNFRSF14Q92956 283 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 BORCS5Q969J3 196 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 UPRTQ96BW1 309 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 YPEL2Q96QA6 119 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 SLC6A7Q99884 636 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 PARP12Q9H0J9 701 aaKnown RBP7.84□□□□□ -1.15
CUX1-216ENST00000558469 HRASLSQ9HDD0 168 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 MCUBQ9NWR8 336 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 PSG11Q9UQ72 335 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 HIVEP1P15822 2718 aa7.84□□□□□ -1.15
CUX1-216ENST00000558469 TLN2Q9Y4G6 2542 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 CSPG4Q6UVK1 2322 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 IGHV3OR16-10A0A075B7F0 116 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 CENPVL3A0A0U1RRI6 287 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 A8MV72 311 aaPredicted RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 DISC1C4P0D8 188 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 J3QR06 171 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 SLC31A2O15432 143 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 ARG1P05089 322 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 AADACP22760 399 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 CD34P28906 385 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 FAUP35544 74 aaKnown RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 UBE2E1P51965 193 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 IFITM3Q01628 133 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 SCGB2B2Q4G0G5 96 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 CT45A1Q5HYN5 189 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 LY6G6FQ5SQ64 297 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 C1orf229Q6ZS94 237 aaPredicted RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 TMEM17Q86X19 198 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 ZNF439Q8NDP4 499 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 OR2AK2Q8NG84 335 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 OR6F1Q8NGZ6 308 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 OR9G1Q8NH87 305 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 CT45A3Q8NHU0 189 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 GIMAP1Q8WWP7 306 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 EDARADDQ8WWZ3 215 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 ZNF2Q9BSG1 426 aaPredicted RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 ABHD14AQ9BUJ0 271 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 TOLLIPQ9H0E2 274 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 C11orf54Q9H0W9 315 aaPredicted RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 ZNRD1Q9P1U0 126 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 RNF150Q9ULK6 438 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 OR2W1Q9Y3N9 320 aa7.83□□□□□ -1.16
CUX1-216ENST00000558469 RBM7Q9Y580 266 aaKnown RBP7.83□□□□□ -1.16
CUX1-216ENST00000558469 SVEP1Q4LDE5 3571 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 TRAV40A0A0B4J280 105 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 CENPXA8MT69 81 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 PLA2G10O15496 165 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 TUSC2O75896 110 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 PPYP01298 95 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 OR8U9P0C7N5 309 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 ZNF735P0CB33 412 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 IGHV4-38-2P0DP08 117 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 LUMP51884 338 aaPredicted RBP7.82□□□□□ -1.16
CUX1-216ENST00000558469 LGALS4P56470 323 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 FXYD4P59646 89 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 HERV-K104P61576 105 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 Q3ZCU0 254 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 FAM120AOSQ5T036 256 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 GPR157Q5UAW9 335 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 ZNF660Q6AZW8 331 aaPredicted RBP7.82□□□□□ -1.16
CUX1-216ENST00000558469 CLEC9AQ6UXN8 241 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 SLC25A48Q6ZT89 311 aaKnown RBP7.82□□□□□ -1.16
CUX1-216ENST00000558469 ARRDC1Q8N5I2 433 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 C8orf31Q8N9H6 132 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 BEND2Q8NDZ0 799 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 OR11H6Q8NGC7 330 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 OR51S1Q8NGJ8 323 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 OR10X1Q8NGY0 326 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 OR8U1Q8NH10 309 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 ZNF596Q8TC21 504 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 SECTM1Q8WVN6 248 aa7.82□□□□□ -1.16
CUX1-216ENST00000558469 DEDD2Q8WXF8 326 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms